Supplementary table 2. Top 259 genes that distinguish DFSP from the other soft tissue tumors as identified by SAM Input Parameters Imputation Engine 10-Nearest Neighbor Imputer Data Type "Two Class, unpaired data" Data in log scale? TRUE Number of Permutations 1000 Blocked Permutation? FALSE RNG Seed 1234567 "(Delta, Fold Change)" "(2,46002, )" "(Upper Cutoff, Lower Cutoff)" "(4,02194, -6,08331)" Computed Quantities Computed Exchangeability Factor S0 236.1422386 S0 percentile 0 "False Significant Number (Median, 90 percentile)" "(0,57990, 0,57990)" "False Discovery Rate (Median, 90 percentile)" "(0,19928, 0,19928)" Pi0Hat 0.5799 chromosome location on the chromosome gene ID (with hyperlink to http://genome-www4.stanford.edu/cgi-bin/SMD/source/) "http://genome.ucsc.edu/;Oct 7, 2000 Freeze" 1 5343073 120799 MOT8 hypothetical protein MOT8 Hs.25924 H10068 1 5477975 114233 Homo sapiens clone 23927 mRNA sequence Hs.12473 H06156 1 34619240 "100990 COL16A1 collagen, type XVI, alpha 1 Hs.26208 R54778 " 1 44346595 108244 HEYL hairy/enhancer-of-split related with YRPW motif-like Hs.23823 R25238 1 71023954 313886 FLJ10884 hypothetical protein FLJ10884 Hs.150890 AI341793 1 102783923 "220131 TGFBR3 transforming growth factor, beta receptor III (betaglycan, 300kD) Hs.342874 N26658 " 1 129390385 "110916 IGSF3 immunoglobulin superfamily, member 3 Hs.81234 AA425437 " 1 129765206 111092 PTGFRN prostaglandin F2 receptor negative regulator Hs.300591 T83630 1 131914161 99539 ESTs Hs.164680 AA463229 1 164077759 108043 ESTs Hs.108264 AA401244 1 177693047 "113037 **ESTs, Highly similar to transcriptional acitvator [Homo sapiens] [H.sapiens] Hs.356653 H05654 " 1 212856233 120717 C1orf17 chromosome 1 open reading frame 17 Hs.106794 H08862 1 226095111 307158 HFL1 H factor (complement)-like 1 Hs.278568 AA953249 1 234168692 107193 PEPP3 **phosphoinositol 3-phosphate-binding protein-3 Hs.241161 R54589 1 234750555 102119 CNTN2 contactin 2 (axonal) Hs.2998 R14151 1 239886041 102058 CD34 CD34 antigen Hs.374990 AA434387 1 243474316 109952 FLJ10724 melanoma antigen recognized by T cells 2 Hs.58650 AA010728 1 265958310 103146 FLJ14525 hypothetical protein FLJ14525 Hs.26812 N59373 1 #N/A "221277 Homo sapiens, clone MGC:25060 IMAGE:4480427, mRNA, complete cds Hs.22586 AA776087 " 1 #N/A "111682 Homo sapiens cDNA FLJ32096 fis, clone OCBBF2001075 Hs.101077 R47938 " 2 46091200 106353 KIAA0436 putative L-type neutral amino acid transporter Hs.110 AA902897 2 72014246 309960 KIAA0053 KIAA0053 gene product Hs.1528 AI264291 2 103338173 "120709 Homo sapiens cDNA FLJ30555 fis, clone BRAWH2003818 Hs.125019 H17143 " 2 104255404 105455 Homo sapiens mRNA; cDNA DKFZp586P1124 (from clone DKFZp586P1124) Hs.21380 R41972 2 153424918 "113011 ACVR2 activin A receptor, type II Hs.26014 AA682819 " 2 166320792 "108970 PLA2R1 phospholipase A2 receptor 1, 180kD Hs.171945 W04525 " 2 166321764 98438 ESTs Hs.32345 AI668612 2 166467846 106759 R91516 2 182339972 109926 CHN1 chimerin (chimaerin) 1 Hs.22660 AA598668 2 183922655 114638 HOXD4 homeo box D4 Hs.278255 AA447692 2 191259019 115963 FRZB frizzled-related protein Hs.153684 H87275 2 199634727 114887 MYO1B myosin IB Hs.121576 N95358 2 206312891 319005 FLJ30574 hypothetical protein FLJ30574 Hs.350388 AI206317 2 211461527 106072 FZD7 frizzled homolog 7 (Drosophila) Hs.173859 N69049 2 212259473 225062 LOC130026 hypothetical protein BC000993 Hs.334319 AA774047 2 212873862 "118861 Homo sapiens, clone IMAGE:5275933, mRNA Hs.285728 AA045340 " 2 226422206 "100206 Homo sapiens, clone IMAGE:4183312, mRNA, partial cds Hs.180324 T52829 " 2 252270534 113289 DKFZP586B2420 DKFZP586B2420 protein Hs.7949 W58343 2 #N/A 307742 FZD7 frizzled homolog 7 (Drosophila) Hs.173859 H71474 2 #N/A 116142 CHN1 chimerin (chimaerin) 1 Hs.22660 AA902624 3 32952797 "315088 RARB retinoic acid receptor, beta Hs.171495 H69474 " 3 52791869 "98981 ESTs, Moderately similar to ALU8_HUMAN Alu subfamily SX sequence contamination warning entry [H.sapiens] Hs.356718 T67066 " 3 75186605 "119130 Homo sapiens cDNA FLJ13296 fis, clone OVARC1001261 Hs.21610 R67543 " 3 86818833 115748 CNTN3 contactin 3 (plasmacytoma associated) Hs.35089 N50845 3 135969325 221066 ESTs Hs.42419 N22766 3 172633557 "100008 ESTs, Weakly similar to T08678 hypothetical protein DKFZp564I1922.1 - human (fragment) [H.sapiens] Hs.88162 H89282 " 3 191624988 "113637 SERPINI1 serine (or cysteine) proteinase inhibitor, clade I (neuroserpin), member 1 Hs.78589 AA115876 " 3 222947363 102660 APOD apolipoprotein D Hs.75736 H15842 3 #N/A 319564 EST Hs.134897 AI092576 4 16329409 100943 C1QTNF7 C1q and tumor necrosis factor related protein 7 Hs.153714 N75552 4 21868239 "118597 ESTs, Highly similar to T42626 secreted leucine-rich repeat-containing protein SLIT2 - mouse (fragment) [M.musculus] Hs.110373 AA489463 " 4 42166224 315624 ESTs Hs.263351 AI224841 4 60016365 117136 KIAA1211 KIAA1211 protein Hs.205293 N35889 4 103696478 120432 TSPAN-5 tetraspan 5 Hs.8037 W72167 4 105641671 102583 LOC115265 similar to Smhs1 protein Hs.107515 H15301 4 109046996 112945 LOC56898 oxidoreductase UCPA Hs.124696 R97516 4 117837730 118473 ENPEP glutamyl aminopeptidase (aminopeptidase A) Hs.291 AA099910 4 131117207 "226260 ESTs, Weakly similar to extensin-like protein [Arabidopsis thaliana] [A.thaliana] Hs.189114 AA890146 " 4 148488373 "115463 SERPINE2 serine (or cysteine) proteinase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 Hs.21858 N57754 " 4 156778768 111691 EDNRA endothelin receptor type A Hs.76252 AA450009 4 179134710 "98721 ESTs, Moderately similar to AF097994_1 L-kynurenine/alpha-aminoadipate aminotransferase [Homo sapiens] [H.sapiens] Hs.269084 N54512 " 4 #N/A "119371 SPRY1 sprouty homolog 1, antagonist of FGF signaling (Drosophila) Hs.88044 AA055439 " 5 7133642 "102582 Homo sapiens cDNA FLJ12815 fis, clone NT2RP2002546 Hs.49476 AA284237 " 5 18503286 312706 ESTs Hs.116192 AI339471 5 18504482 "100828 ANKH **ankylosis, progressive homolog (mouse) Hs.168640 H10416 " 5 84441328 110269 ESTs Hs.42502 AA041482 5 84564652 108485 F2R coagulation factor II (thrombin) receptor Hs.128087 AA455910 5 84583184 "222380 ESTs, Weakly similar to hypothetical protein FLJ20489 [Homo sapiens] [H.sapiens] Hs.355574 N20406 " 5 141743293 109176 FBN2 fibrillin 2 (congenital contractural arachnodactyly) Hs.79432 T98151 5 159120616 "107012 ARAP3 ARF-GAP, RHO-GAP, ankyrin repeat and plekstrin homology domains-containing protein 3 Hs.25277 AA458491 " 5 169811251 310422 ZNF300 kruppel-like zinc finger protein Hs.288928 AA994690 5 175405407 99317 C5orf4 chromosome 5 open reading frame 4 Hs.10235 AA406261 5 189215031 108994 SLIT3 slit homolog 3 (Drosophila) Hs.57929 H41160 5 189695089 "117849 ESTs, Highly similar to slit homolog 3 (Drosophila); slit (Drosophila) homolog 3; slit (Drosophila) homolog 2; slit2 [Homo sapiens] [H.sapiens] Hs.129229 AA991373 " 5 #N/A "102351 PDGFRB platelet-derived growth factor receptor, beta polypeptide Hs.76144 AI002365 " 6 17297288 99347 MIR myosin regulatory light chain interacting protein Hs.20072 AA486836 6 22970035 225012 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1977059 Hs.351928 N23605 6 22970035 107550 SOX4 SRY (sex determining region Y)-box 4 Hs.83484 AA453420 6 23042290 104911 ESTs Hs.323780 N22836 6 23529116 102100 N90913 6 41679579 106863 MSI2 musashi homolog 2 (Drosophila) Hs.173179 AA235112 6 47789353 315947 TReP-132 transcriptional regulating protein 132 Hs.50102 AI299636 6 58636004 "116883 Homo sapiens, clone IMAGE:3450973, mRNA Hs.7921 AA620437 " 6 71460236 118055 EST Hs.112862 AA620423 6 156918220 120174 ESTs Hs.110406 AA039712 6 161692046 101310 AKAP12 A kinase (PRKA) anchor protein (gravin) 12 Hs.788 AA478542 6 173331720 102475 PLG plasminogen Hs.75576 T73090 6 177715657 222887 ESTs Hs.348762 AA700772 6 #N/A 225230 KIF13A kinesin family member 13A Hs.146286 R39197 6 #N/A 100677 AI049860 7 2261517 99361 LFNG lunatic fringe homolog (Drosophila) Hs.159142 R56561 7 4813019 103310 Homo sapiens mRNA for FLJ00148 protein Hs.21192 R60712 7 7419260 311489 ESTs Hs.150665 AA947456 7 30859723 "220745 Homo sapiens cDNA FLJ30904 fis, clone FEBRA2005824 Hs.7913 N29882 " 7 31123702 "224172 CARD4 caspase recruitment domain family, member 4 Hs.19405 AA699441 " 7 31859827 113563 ADCYAP1R1 adenylate cyclase activating polypeptide 1 (pituitary) receptor type I Hs.4748 H09078 7 81173862 "120135 GNAI1 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 Hs.203862 AA406364 " 7 101422552 105797 G10 maternal G10 transcript Hs.330310 AA406040 7 137390884 225922 Homo sapiens mRNA; cDNA DKFZp566P013 (from clone DKFZp566P013) Hs.172778 R56613 8 9929447 "115275 ESTs, Weakly similar to hypothetical protein FLJ21140 [Homo sapiens] [H.sapiens] Hs.29068 R70140 " 8 19667532 112156 Homo sapiens mRNA; cDNA DKFZp667D095 (from clone DKFZp667D095) Hs.93961 AA417651 8 22577318 "120819 LZTS1 leucine zipper, putative tumor suppressor 1 Hs.93605 H09757 " 8 44587337 120815 C8orf4 chromosome 8 open reading frame 4 Hs.283683 H16793 8 88708832 "99965 Homo sapiens, clone IMAGE:3618365, mRNA Hs.141693 H19013 " 8 100060417 "223663 ESTs, Highly similar to B57784 MTG8 protein splice form a - human [H.sapiens] Hs.221450 AA704718 " 8 #N/A "116123 CBFA2T1 core-binding factor, runt domain, alpha subunit 2; translocated to, 1; cyclin D-related Hs.31551 R91568 " 8 #N/A "116262 EPHX2 epoxide hydrolase 2, cytoplasmic Hs.113 R73524 " 9 29204741 105256 ESTs Hs.293849 N72128 9 41545934 "104737 P23 **unactive progesterone receptor, 23 kD Hs.278270 N45556 " 9 68108024 114871 ESTs Hs.351108 AA598500 9 94111288 120409 UACA **uveal autoantigen with coiled-coil domains and ankyrin repeats Hs.49753 N26011 9 94236793 "98915 OGN osteoglycin (osteoinductive factor, mimecan) Hs.109439 AA045327 " 9 94267188 114768 OMD osteomodulin Hs.94070 N32201 9 94348181 "100732 ECM2 extracellular matrix protein 2, female organ and adipocyte specific Hs.35094 N79778 " 9 113325932 111660 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 248114 Hs.8963 AA424560 9 114943505 "120323 **Homo sapiens cDNA FLJ31796 fis, clone NT2RI2008841 Hs.153799 H87175 " 9 127713333 "114384 Homo sapiens, clone IMAGE:3140802, mRNA Hs.94795 T70352 " 9 129144415 "103509 GOLGA2 **golgi autoantigen, golgin subfamily a, 2 Hs.24049 AA424786 " 9 134636414 "222627 LAMC3 laminin, gamma 3 Hs.69954 R17731 " 9 134718837 309893 FLJ00024 hypothetical protein FLJ00024 Hs.143878 AA961074 9 #N/A "98912 IL11RA interleukin 11 receptor, alpha Hs.64310 AI822086 " 9 #N/A "224116 ESTs, Weakly similar to A46661 leukotriene B4 omega-hydroxylase (EC 1.14.15.-) cytochrome P450 - human [H.sapiens] Hs.355694 AA778653 " 9 #N/A 110026 DKFZp761J1523 hypothetical protein DKFZp761J1523 Hs.257391 AA233552 9 #N/A 108392 ROR2 receptor tyrosine kinase-like orphan receptor 2 Hs.155585 N94921 9 #N/A 118161 PRX2 paired related homeobox protein Hs.86172 AA548667 9 #N/A "224528 EST, Weakly similar to B45082 neurotrophic receptor ror2 precursor - human [H.sapiens] Hs.231139 AA701961 " 10 21437184 102206 ESTs Hs.99472 R16259 10 25872520 311009 DKFZP761L0424 hypothetical protein DKFZp761L0424 Hs.149377 AA927734 10 31961930 111520 KIAA1462 KIAA1462 protein Hs.46901 AA412199 10 33741171 103963 ESTs Hs.104372 R22034 10 41228467 225798 PCDH18 protocadherin 18 Hs.97266 AA704401 10 51346855 102756 ESTs Hs.94309 AI822111 10 62565884 107216 Homo sapiens mRNA; cDNA DKFZp564B222 (from clone DKFZp564B222) Hs.100261 AA447503 10 66983192 "113071 EGR2 early growth response 2 (Krox-20 homolog, Drosophila) Hs.1395 AA446027 " 10 104360829 "106182 ESTs, Highly similar to T08708 hypothetical protein DKFZp564D116.1 - human (fragment) [H.sapiens] Hs.246316 AI820826 " 10 113102876 "221124 Homo sapiens cDNA: FLJ22130 fis, clone HEP19632 Hs.146233 AA778276 " 10 123805834 "119511 TCF7L2 transcription factor 7-like 2 (T-cell specific, HMG-box) Hs.348412 AA029451 " 10 130839943 114183 LOC151568 hypothetical protein BC009491 Hs.343567 AA608555 10 138649934 "105595 **Homo sapiens cDNA FLJ31066 fis, clone HSYRA2001153 Hs.352537 AA009647 " 10 #N/A "101008 ESTs, Weakly similar to hypothetical protein FLJ20837 [Homo sapiens] [H.sapiens] Hs.369669 AA630096 " 10 #N/A "110346 Homo sapiens cDNA FLJ12007 fis, clone HEMBB1001588 Hs.129086 AA987224 " 11 14891471 "115949 SPON1 spondin 1, (f-spondin) extracellular matrix protein Hs.5378 H09099 " 11 34151010 "115168 ESTs, Weakly similar to putative phosphatidylinositol-glycan synthase [Arabidopsis thaliana] [A.thaliana] Hs.47974 N55492 " 11 35801916 "108495 Homo sapiens, similar to hypothetical protein (H. sapiens), clone MGC:34830 IMAGE:5200904, mRNA, complete cds Hs.22270 R17633 " 11 50259807 "106288 NR1H3 nuclear receptor subfamily 1, group H, member 3 Hs.347353 H61726 " 11 61214177 101175 KIAA0937 KIAA0937 protein Hs.62264 AA487527 11 64273865 103164 RAB3IL1 RAB3A interacting protein (rabin3)-like 1 Hs.13759 T70580 11 69972702 "221953 GNAI1 guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 Hs.203862 W46769 " 11 94846219 112835 EST Hs.49609 N69100 11 111191242 "99984 Homo sapiens cDNA FLJ13604 fis, clone PLACE1010401 Hs.23193 R21422 " 11 111195257 317006 AD031 AD031 protein Hs.44004 AI352084 11 131232124 107266 KIAA0638 KIAA0638 protein Hs.77864 AA405486 11 133307586 224408 CHN1 chimerin (chimaerin) 1 Hs.22660 AA888225 11 133307586 223790 R99080 11 133314340 319644 R07168 11 143663906 103839 TEM8 tumor endothelial marker 8 Hs.8966 H58644 11 #N/A 308936 SCDGF-B spinal cord-derived growth factor-B Hs.112885 AA904948 11 #N/A 114989 TEM8 tumor endothelial marker 8 Hs.8966 N20989 11 #N/A 106337 ESTs Hs.146276 AI261536 11 #N/A 224268 G2 G2 protein Hs.30660 R38090 11 #N/A "108008 ESTs, Moderately similar to ALU8_HUMAN Alu subfamily SX sequence contamination warning entry [H.sapiens] Hs.356718 W78840 " 11 #N/A 103632 ESTs Hs.133863 R14773 12 7125896 "225449 Homo sapiens cDNA FLJ31733 fis, clone NT2RI2006943 Hs.44067 N32102 " 12 32309586 "118336 Homo sapiens cDNA FLJ14337 fis, clone PLACE4000494 Hs.180187 AA128017 " 12 52679293 106957 LFG lifeguard Hs.182859 R26621 12 54866907 "101574 OR7E47P olfactory receptor, family 7, subfamily E, member 47 pseudogene Hs.355314 AA620759 " 12 69929375 "225591 ESTs, Moderately similar to ZN91_HUMAN Zinc finger protein 91 (Zinc finger protein HTF10) (HPF7) [H.sapiens] Hs.339024 AA663730 " 12 97072894 104712 ESTs Hs.63176 AA055348 12 #N/A 99264 ACVRL1 activin A receptor type II-like 1 Hs.172670 H42572 12 #N/A 116169 AVPR1A arginine vasopressin receptor 1A Hs.2131 AA448190 13 29921275 "222279 Homo sapiens, clone IMAGE:4825471, mRNA Hs.13205 N24070 " 13 34107647 226711 NBEA neurobeachin Hs.3821 AA775279 13 34590289 112697 Homo sapiens clone 24628 mRNA sequence Hs.129997 AA885845 13 83275076 101968 SPRY2 sprouty homolog 2 (Drosophila) Hs.18676 AA453759 13 #N/A 245567 KLF5 Kruppel-like factor 5 (intestinal) Hs.84728 R27011 14 37934508 "113114 Homo sapiens cDNA FLJ30803 fis, clone FEBRA2001245, weakly similar to NAG14 Hs.31522 H82848 " 14 55937930 112123 LOC51339 heptacellular carcinoma novel gene-3 protein Hs.48950 AA487274 14 60902355 "117814 ARHJ ras homolog gene family, member J Hs.243010 AA010753 " 14 67461488 110272 KIAA1130 KIAA1130 protein Hs.21035 H18956 14 69983847 "99359 Homo sapiens, clone IMAGE:5286091, mRNA, partial cds Hs.375008 AA417567 " 14 79087676 114906 NRXN3 neurexin 3 Hs.247837 AA450335 14 91734062 226876 FBLN5 fibulin 5 Hs.11494 H17615 14 101510924 120841 ESTs Hs.26346 R44918 15 23508679 "100163 CHRFAM7A CHRNA7 (cholinergic receptor, nicotinic, alpha polypeptide 7, exons 5-10) and FAM7A (family with sequence similarity 7A, exons A-E) fusion Hs.353211 W93369 " 15 33652110 102406 ESTs Hs.50162 N67355 15 54677164 "105870 ALDH1A2 aldehyde dehydrogenase 1 family, member A2 Hs.95197 AA447978 " 15 58022882 104996 ESTs Hs.56254 W58165 15 68086906 "107874 ESTs, Weakly similar to hypothetical protein FLJ20489 [Homo sapiens] [H.sapiens] Hs.98312 AA418895 " 15 78318949 114842 ESTs Hs.161757 T67520 15 91561096 226855 LOC56963 hypothetical protein from EUROIMAGE 363668 Hs.271277 AA634385 16 76374194 "100977 CDH11 cadherin 11, type 2, OB-cadherin (osteoblast) Hs.75929 AA136983 " 16 76412077 319668 ESTs Hs.56071 AI040305 16 83261024 109540 WWP2 Nedd-4-like ubiquitin-protein ligase Hs.333382 H68403 16 93584201 118886 MAF v-maf musculoaponeurotic fibrosarcoma oncogene homolog (avian) Hs.30250 AA043501 17 36929756 220265 VTS58635 ras-like protein VTS58635 Hs.24986 H52727 17 40846456 224573 TEM7 tumor endothelial marker 7 precursor Hs.125036 AA678084 17 46275454 114309 MEOX1 mesenchyme homeo box 1 Hs.438 AA426311 17 55218434 109549 SPAG9 sperm associated antigen 9 Hs.129872 AA399253 17 62375317 119312 ESTs Hs.40639 N26608 17 62459841 "311281 ESTs, Weakly similar to T08931 hypothetical protein T15N24.100 - Arabidopsis thaliana [A.thaliana] Hs.156395 AI339225 " 17 62632196 117507 MSI2 musashi homolog 2 (Drosophila) Hs.173179 N45139 17 63719362 308002 POPX1 partner of PIX 1 Hs.166351 W40125 17 64389427 "108542 ESTs, Highly similar to T50835 hypothetical protein [imported] - human [H.sapiens] Hs.88845 AA046023 " 17 65115444 222413 LOC51136 PTD016 protein Hs.30154 N51514 17 66438203 307520 TBX2 T-box 2 Hs.168357 AA927923 17 68057287 "315099 ESTs, Weakly similar to ALU1_HUMAN Alu subfamily J sequence contamination warning entry [H.sapiens] Hs.55780 AI203113 " 17 72118231 "106729 PRKCA protein kinase C, alpha Hs.169449 AA029890 " 17 73805025 111111 ESTs Hs.268874 R98003 17 74243322 "101293 ABCA9 ATP-binding cassette, sub-family A (ABC1), member 9 Hs.301496 AI822061 " 17 74286183 "103577 ABCA6 ATP-binding cassette, sub-family A (ABC1), member 6 Hs.15780 AA099357 " 17 78871861 105491 CEP4 Cdc42 effector protein 4; binder of Rho GTPases 4 Hs.3903 AA449061 17 80349103 113723 TTYH2 tweety homolog 2 (Drosophila) Hs.27935 AA434395 17 80850831 313299 FDXR ferredoxin reductase Hs.69745 AI671604 17 82319242 "105851 ESTs, Weakly similar to putative protein [Arabidopsis thaliana] [A.thaliana] Hs.374817 AA452113 " 17 86546682 110582 FLJ20753 hypothetical protein FLJ20753 Hs.301363 AA431750 17 89406603 "114952 RAB40B RAB40B, member RAS oncogene family Hs.302498 T60070 " 17 #N/A "307146 AXIN2 axin 2 (conductin, axil) Hs.127337 AA976642 " 17 #N/A 120766 GRB2 growth factor receptor-bound protein 2 Hs.285814 AA425382 17 #N/A 99971 ESTs Hs.192262 AI192496 17 #N/A "100201 RAB40B RAB40B, member RAS oncogene family Hs.302498 AI668570 " 18 49895568 "110846 Homo sapiens cDNA FLJ30016 fis, clone 3NB692000429 Hs.14931 N55259 " 18 58436398 "310651 Homo sapiens cDNA FLJ11918 fis, clone HEMBB1000272 Hs.289068 AA953301 " 18 77814619 110377 ESTs Hs.7065 H05818 18 86112725 "116542 CTDP1 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 Hs.4076 W40287 " 19 22649686 222273 CRLF1 cytokine receptor-like factor 1 Hs.114948 AA706010 19 36551968 120229 KIAA1474 KIAA1474 protein Hs.278436 N70608 19 61300274 "223240 PLEKHA4 pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 4 Hs.9469 AA521373 " 19 74697125 104437 ZF5128 zinc finger protein Hs.296365 N74284 20 5644614 119206 Homo sapiens mRNA; cDNA DKFZp434I0623 (from clone DKFZp434I0623) Hs.123609 AA451822 20 33155479 "118288 CBFA2T2 core-binding factor, runt domain, alpha subunit 2; translocated to, 2 Hs.153934 AA496845 " 20 37941922 226968 KIAA1755 KIAA1755 protein Hs.114085 AA701983 20 53429322 116284 SHOX2 short stature homeobox 2 Hs.55967 AA425419 20 54571284 100071 ESTs Hs.32135 N78909 20 58614638 104674 BMP7 bone morphogenetic protein 7 (osteogenic protein 1) Hs.170195 W73473 20 66011169 116928 EEF1A1 **eukaryotic translation elongation factor 1 alpha 1 Hs.181165 N93790 20 66011169 307452 ZNF340 zinc finger protein 340 Hs.254837 AA917868 21 40949318 "225144 ESTs, Moderately similar to CN9A_HUMAN High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A [H.sapiens] Hs.371219 AA670280 " 21 #N/A 111283 AA995573 22 16642155 117520 PNUTL1 peanut-like 1 (Drosophila) Hs.3847 N92319 22 16894328 98450 ARVCF armadillo repeat gene deletes in velocardiofacial syndrome Hs.171900 H17198 22 17075328 106130 ESTs Hs.98570 AA443624 22 20874065 "108835 ESTs, Weakly similar to I38022 hypothetical protein - human [H.sapiens] Hs.28439 H87363 " 22 21223467 101133 BK65A6.2 Sushi domain (SCR repeat) containing Hs.131819 AI015693 22 32697017 317973 RBM9 RNA binding motif protein 9 Hs.5011 AI242494 22 36147957 121498 PDGFB platelet-derived growth factor beta polypeptide (simian sarcoma viral (v-sis) oncogene homolog) Hs.1976 W72000 22 #N/A "102164 ESTs, Weakly similar to ALU1_HUMAN Alu subfamily J sequence contamination warning entry [H.sapiens] Hs.369903 AI003064 " 23 12182795 103727 GPM6B glycoprotein M6B Hs.5422 N59368 23 43667007 "98806 Homo sapiens cDNA: FLJ21909 fis, clone HEP03834 Hs.18612 W90727 " 23 50703355 108033 KLF8 Kruppel-like factor 8 Hs.320861 H22820 23 72563740 117871 ITM2A integral membrane protein 2A Hs.17109 AA775257 23 97346442 106800 SYTL4 synaptotagmin-like 4 (granuphilin-a) Hs.247525 AA451888 23 110582334 119853 CAPN6 calpain 6 Hs.169172 AA457238 23 119896413 225683 SEP2 septin 6 Hs.90998 AA868745 23 160789738 "110950 Homo sapiens cDNA FLJ30869 fis, clone FEBRA2004224 Hs.349611 AA424937 " X #N/A 102382 AMOT angiomotin Hs.9271 AA490582 #N/A #N/A 119666 ESTs Hs.247150 AA459734 #N/A #N/A "112147 Homo sapiens cDNA FLJ30065 fis, clone ADRGL2000328 Hs.141120 AI820817 " #N/A #N/A 119852 CTSE cathepsin E Hs.1355 H94487 #N/A #N/A 115180 Homo sapiens mRNA; cDNA DKFZp434O1311 (from clone DKFZp434O1311) Hs.30483 W93481