Supplemental material for O. Alter, P. O. Brown and D. Botstein, "Generalized Singular Value Decomposition for Genome-Wide Expression Data Processing and Modeling," Proceedings of the National Academy of Sciences 100 (6), pp. 3351–3356 (March 2003).
- A PDF format file, readable by Adobe Acrobat Reader.
- PNAS_2003.pdf
- A PDF format file, readable by Adobe Acrobat Reader.
- PNAS_2003_Appendix.pdf
- A Mathematica 4.0 code file, executable by Mathematica 4.0 and readable by the
freely available MathReader 4.0.
- A PDF format file, readable by Adobe Acrobat Reader:
Tab-delimited text format files, readable by both Mathematica and Microsoft Excel.
Yeast Expression Dataset and Classification Lists of Yeast Cell Cycle-Regulated Genes
- Reproduced from P. T. Spellman, G. Sherlock, M. Q. Zhang, V. R. Iyer, K. Anders, M. B. Eisen, P. O. Brown, D. Botstein and B. Futcher, "Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization,"
Molecular Biology of the Cell 9 (12), pp. 3273–3297 (December 1998).
Classification List of Yeast Pheromone Synchronization Response Genes
- Selected according to their Gene Ontology (GO) annotations as obtained from the Stanford Saccharomyces cerevisiae Genome Database (SGD).
Human Expression Dataset and Classification Lists of Human Cell Cycle-Regulated Genes
- Reproduced from M. L. Whitfield, G. Sherlock, A. Saldanha, J. I. Murray, C. A. Ball, K. E. Alezander, J. C. Matese, C. M. Perou, M. M. Hurt, P. O. Brown and D. Botstein,
"Identification of genes periodically expressed in the human cell cycle and their expression in tumors,"
Molecular Biology of the Cell 13 (6), pp. 1977–2000 (June 2002).
Classification List of Human Synchronization Stress Response Genes
- Selected according to their annotations as obtained from the Stanford Microarray Database (SMD).
Yeast and Human Arraylets Datasets