Alignment table
Needleman Wunsch alignment of:
- S. cerevisiae gene msh2 (YOL090W)
- Human mutator gene (hMSH2). GenBank: U03911
(Yeast sequence on top).
BLAST P-value: 3.8e-255
Percent Similarity (|+|): 64.7 Percent Identity (|): 43.0
1 MSSTRPELKFSDVSEERNFYKKYTGLPKKPLKTIRLVDKGDYYTVIGSDA 50
|. ..| | ..| .| | | |||.|| .||||.|||||||. |.||
1 MAVQPKETLQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDA 50
51 IFVADSVYHTQSVLKNCQLDPVTAKNFHEPTKYVTVSLQVLATLLKLCLL 100
||.| .||.|||||| |||..|||||. |.|| |..||| ||
51 LLAAREVFKTQGVIKY..MGPAGAKNLQS....VVLSKMNFESFVKDLLL 94
101 DLGYKVEIY..........DKGWKLIKSASPGNIEQVNELMNMNIDSSII 140
.|||||| |.|| | .||||||.|.|||| | | |
95 VRQYRVEVYKNRAGNKASKENDWYLAYKASPGNLSQFEDILFGNNDMSAS 144
141 IASLKVQWNSQDGNCIIGVAFIDTTAYKVGMLDIVDNEVYSNLESFLIQL 190
|| | |. .. ||. |||||||... |||| ||.||| |||||.|||||
145 IGVVGVKMSAVDGQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQI 194
191 GVKECLVQDLTSNSNSNAEMQKVINVIDRCGCVVTLLKNSEFSEKDVELD 240
|.|||||.| ||..|||.|| .||||.|.||| |..|||.||| |
195 GPKECVLPG....GETAGDMGKLRQIIQRGGILITERKKADFSTKDIYQD 240
241 LTKLL....GDDL.ALSLPQKYSKLSMGACNALIGYLQLLSEQDQVGKYE 285
|.||| |||| . |||. ..|.||. .||| ||||||||...|.||
241 LNRLLKGKKGEQMNSAVLPEMENQVAVSSLSAVIKFLELLSDDSNFGQFE 290
286 LVEHKLKEFMKLDASAIKALNLFPQGPQNPFGSNNLAVSGFTSAGNSGKV 335
|.. .|.|||||| .||||||||..|.||. ||..||
291 LTTFDFSQYMKLDIAAVRALNLFQGSVEDTTGSQSLA............. 327
336 TSLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYLIDQIELR 385
.|||.||| .| ||||||||||| | | ||.| |||| |||| |||
328 ....ALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDAELR 373
386 QMLTSEYLPMIPDIRRLTKKLNKR.GNLEDVLKIYQFSKRIPEIVQVFTS 434
| | .|.|..||||.||.|||.|. |||||..|||| ..||||||.|
374 QTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQAL.. 421
435 FLEDDSPTEPVNELVRSVWLAPLSHHVEPLSKFEEMVETTVDLDAYEENN 484
|...|. ..|| .|||.||.. ..|||||||||||||||. |||
422 ....EKHEGKHQKLLLAVFVTPLTDLRSDFSKFQEMIETTLDMDQV.ENH 466
485 EFMIKVEFNEELGKIRSKLDTLRDEIHSIHLDSAEDLGFDPDKKLKLENH 534
|||||..||.|||.||. ||.| ..|||. |..| ||||||||.||||.
467 EFLVKPSFDPNLSELREIMNDLEKKMQSTLISAARDLGLDPGKQIKLDSS 516
535 HLHGWCMRLTRNDAKELRKHKKYIELSTVKAGIFFSTKQLKSIANETNIL 584
||||||| .|.| ||.||.| .|.. |.|| |....|.||.|| .
517 AQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKN 566
585 QKEYDKQQSALVREIINITLTYTPVFEKLSLVLAHLDVIASFAHTSSYAP 634
..|||..|.|||||||||. .|...||.|. ||||||.|.||||.|. ||
567 KTEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAP 616
635 IPYIRPKLHPMDSERRTHLISSRHPVLEMQDDISFISNDVTLESGKGDFL 684
|||||| | . .|| |. | .||||.|||||||.||.||| ||.||. |
617 VPYVRPAILE.KGQGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFH 665
685 IITGPNMGGKSTYIRQVGVISLMAQIGCFVPCEEAEIAIVDAILCRVGAG 734
||||||||||||||||.||| ||||||||||||.|||.|||.||.|||||
666 IITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAG 715
735 DSQLKGVSTFMVEILETASILKNASKNSLIIVDELGRGTSTYDGFGLAWA 784
|||||||||||.||||||||||.|.|||||||||||||||||||||||||
716 DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWA 765
785 IAEHIASKIGCFALFATHFHELTELSEKLPNVKNMHVVAHIEKNLKEQKH 834
|.|.||.|||.|.||||||||||.|.|.||.|.||||.| .
766 ISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALT......... 806
835 DDEDITLLYKVEPGISDQSFGIHVAEVVQFPEKIVKMAKRKANELDDLKT 884
.||.|||||.|..||||||||||||||..||..||. ||.|| |||||.
807 TEETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQY 856
885 NNEDL......KKAKLSLQEVNEGNIRLKALLKEWIRKVKEEGLHDPSKI 928
.|. . || |. | |||| ||.|||.|||| .|
857 IGESQGYDIMEPAAKKCYLEREQGE....KIIQEFLSKVKQMPF...... 896
929 TEEASQHKIQELLRAIANEPEKENDNYLKYIKALLL.... 964
.| ||..| ||.| .|. .||.||. | . |
897 .TEMSEENITIKLKQLKAEVIAKNNSFVNEIISRIKVTT* 935