Tissue Microarray
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System requirements for using the TMA-Combiner
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Explore combined TMA datasets.
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© 2004-2007 by
Chih Long Liu

Download Software

File Size Description
Combiner
1.00

(3-9-05)
179 kb The TMA-Combiner. Combines TMA data, in text tab-delimited tables (from TMA-Deconvoluter), from one or multiple TMAs, into a single table.
Combiner
Documentation

(3-2-06)
1.52 MB Downloadable version of the on-line documentation for the Combiner, PDF format.
Stainfinder 1.1
source code

(2-20-05)
15 kb The source code for the CGI program Stainfinder (written in PERL). This is Version 1.1, which has been updated to work with the TMA-Combiner. See the update section for details.
Combiner
Demo Suite
(zipped)


(3-9-05)
84 kb The TMA-Combiner Demo Suite. Contains the TMA-Combiner 1.00, one sample TMA containing replicate cores, its output file, and the TreeView-compatible clustered files. Individual components may be downloaded below.
Note: individual components may be updated more frequently than this suite. Also, the clustered files were clustered with Cluster 3.0.
Downloadable components of Demo Suite
Sample TMA TXT, OUT,
GTR, ATR, CDT

(3-3-05)
111 kb
total
A sample TMA dataset, based on the Synovial Sarcoma TMA dataset. This dataset consists of a single TMA with numerous duplicate cores. Consists of the following:
TXT = Pre-cluster, uncombined output file
OUT = Combined TMA output, in Pre-cluster format
TreeView files:
GTR = Gene dendrogram
ATR = Array dendrogram
CDT = Clustered output

Note: if you're looking for other files related to the TMA-Combiner, such as the TMA-Deconvoluter, click here.


Last edited by Chih Long Liu on January 17, 2007