Tissue Microarray
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© 2002-2007 by
Chih Long Liu

Download Software

File Size Description
Deconvoluter
1.10

(2-26-05)
158 kb The TMA-Deconvoluter. Converts raw scoring worksheets from the 3-D TMA layout into a 2-D tabulated table format suitable for further analysis.
Deconvoluter
Documentation

(2-26-05)
2.78 Mb Downloadable version of the on-line documentation for the Deconvoluter. Contents are very similar to the contents of this website. PDF format.
Stainfinder
source code

(4-2-02)
14 kb The source code for the CGI program Stainfinder (written in PERL), required for setting up the on-line digital image collection that will work in concert with TMA datasets viewed under TreeView.
Demo Suite
1.10 (zipped)


(2-26-05)
141 kb The TMA Software Demo Suite. Contains the TMA-Deconvoluter V. 1.10, two sample TMAs, their output files, and their TreeView-compatible clustered files. Individual components may be downloaded below.
Note: individual components may be updated more frequently than this suite.
Downloadable components of Demo Suite
Sample TMA 4

XLS
, TXT, KM,
GTR, ATR, CDT

(3-30-02)
132 kb
total
The sample TMA-4 lymphoma array. Consists of the following:
XLS = Raw scoring worksheet
TXT = Pre-cluster output file
KM  = Output for Kaplan-Meier or other analysis
TreeView files:
GTR = Gene dendrogram
ATR = Array dendrogram
CDT = Clustered output
Sample TMA 5

XLS
, TXT, KM,
GTR, ATR, CDT

(3-30-02)
128 kb
total
The sample TMA-5 breast array. Consists of the following:
XLS = Raw scoring worksheet
TXT = Pre-cluster output file
KM  = Output for Kaplan-Meier or other analysis
TreeView files:
GTR = Gene dendrogram
ATR = Array dendrogram
CDT = Clustered output
Lookup File
(3-30-02)
142 kb The companion lookup file for the Demo Suite.
Older Versions of the TMA-Deconvoluter
Version 1.08
(8-20-03)
136kb to 160kb Earlier versions. It is highly recommended that you download the latest version of the TMA-Deconvoluter to minimize problems resulting from bugs present in earlier versions. Check the Revision History for details and for information on which version is the earliest supported version.
Version 1.07
(4-1-03)
Version 1.06
(6-1-02)
Version 1.05a
(4-26-02)
Version 1.05
(4-22-02)
Version 1.04
(4-7-02)
Version 1.03
(3-15-02)
Version 1.02
(3-5-02)
Version 1.01
(2-8-02)
Version 1.00
(5-28-01)

Last edited by Chih Long Liu on January 17, 2007