Open the Cluster program. If you don't have it, download
it from http://rana.lbl.gov/EisenSoftware.htm.
You may pre-filter the data if you wish; otherwise, proceed to
clustering by clicking on the "Hierarchical Clustering" tab. You
should see the following screen below:
Cluster Program screenshot
Click on the image for a larger view of the picture.
The default parameters for clustering are shown in that
screenshot. If you wish, you may modify these parameters or other
parameters available in the Cluster program. However, the demo files
provided on this website have been clustered with these default
parameters. Click on "Average Linkage Clustering". The
resulting CDT, GTR, and ATR files will appear in your working
directory and are ready for viewing under TreeView.
Back to Step 2.
Step 4 - TreeView
Return to the walkthrough