Walkthrough for Stainfinder - 1
What you will need for this walkthrough:
Note: if this is your first time using this TMA data
management system, it is recommended that you proceed to the Downloads
section and download the Demo Suite files. The examples presented in
this walkthrough employ those files, and you should obtain the same
results in using these files and with the
other necessary programs available elsewhere. It is also highly
recommended that you first go through the TMA-Deconvoluter walkthrough if you haven't already done so.
- Your digital image collection with files created or named
in the Bliss filename nomenclature.
- A computer connected to your intranet or to the Internet
that will serve as the web server for your digital image collection.
- A web server program that can support CGI.
- The PERL interpreter appropriate for your web server.
- The Stainfinder program.
- A clustered dataset
- A web browser capable of displaying images
Begin by setting up your web server. Instructions are
Deposit your TMA image files in your web server. Please
refer to the Bliss file system nomenclature for proper file system
structure and file names. Be sure that the entire collection resides
inside the directory structure recognized by the web server.
Deposit your most updated lookup file into your web
server, in the "Composites" directory of your TMA image file
Proceed to Step 2 to configure Stainfinder and TreeView.
Step 2 - Configuring
Stainfinder and TreeView
Return to the walkthrough overview.