******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 2.2 (Release date: 1998/02/27 00:47:06) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.sdsc.edu. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.sdsc.edu. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= meme.45921.data (deleted by web version of MEME) ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ itY(GUA)O 1.0000 619 iYBR070C 1.0000 478 iYBR077C 1.0000 832 iYBR162C 1.0000 662 iYCR063W 1.0000 519 iYDL004W 1.0000 1173 iYDL055C-0 1.0000 1410 iYDL128W 1.0000 1041 iYDR076W 1.0000 1106 iYDR221W 1.0000 617 iYDR309C 1.0000 930 iYDR441C 1.0000 586 iYDR451C 1.0000 698 iYDR500C 1.0000 501 iYDR507C 1.0000 668 iYDR525W 1.0000 363 iYDR525W-A 1.0000 241 iYEL041W 1.0000 623 iYER069W 1.0000 950 iYER111C 1.0000 1357 iYGL179C-0 1.0000 1131 iYGL179C-1 1.0000 1132 iYGR040W 1.0000 984 iYGR152C 1.0000 601 iYGR189C 1.0000 519 iYGR221C 1.0000 468 iYGR279C 1.0000 953 iYHR061C 1.0000 400 iYIL124W 1.0000 1055 iYIL142W 1.0000 169 iYJL079C 1.0000 563 iYJL158C 1.0000 889 iYJL187C 1.0000 893 iYJL196C 1.0000 460 iYJR053W 1.0000 306 iYKL008C 1.0000 752 iYKL097C 1.0000 341 iYKL098W 1.0000 661 iYKL102C 1.0000 554 iYKL103C 1.0000 381 iYKR011C 1.0000 1044 iYKR041W 1.0000 323 iYLR084C 1.0000 423 iYLR110C 1.0000 294 iYLR111W 1.0000 69 iYLR183C 1.0000 95 iYLR299W 1.0000 905 iYLR330W 1.0000 991 iYLR341W 1.0000 1180 iYML028W 1.0000 679 iYMR016C-0 1.0000 949 iYMR016C-1 1.0000 949 iYMR198W 1.0000 1116 iYMR305C 1.0000 928 iYMR306C-A 1.0000 432 iYNL231C 1.0000 482 iYNL279W 1.0000 370 iYNL283C 1.0000 993 iYNL290W 1.0000 658 iYNL299W 1.0000 521 iYNL301C 1.0000 1183 iYNR008W 1.0000 310 iYOL007C 1.0000 712 iYOL114C 1.0000 402 iYOR246C 1.0000 884 iYOR248W 1.0000 360 iYOR314W 1.0000 1389 iYOR342C 1.0000 524 iYOR372C 1.0000 364 iYOR377W-1 1.0000 855 iYPL056C 1.0000 258 iYPL057C 1.0000 374 iYPL163C 1.0000 507 iYPL256C 1.0000 1112 iYPRWsigma2-1 1.0000 998 TEL15R-1 1.0000 1318 YDR525W-A 1.0000 240 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 8 sites = 72.0 ******************************************************************************** Simplified A 3556:1:: motif letter- C 23::918: probability G 5141:819 matrix T 1213::1: bits 2.2 2.0 1.7 * 1.5 * * Information 1.3 * ** content 1.1 **** (7.3 bits) 0.9 **** 0.7 **** 0.4 * **** 0.2 ******** 0.0 -------- Multilevel GAAACGCG consensus ACGT sequence C -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=8 seqs=77 itY(GUA)O ( 217) GCGTCGCG 0.932711 iYBR070C ( 144) GAAACACG 0.508439 iYBR077C ( 317) AAGACGCG 0.659796 iYBR162C ( 468) CCAACGCG 0.781 iYCR063W ( 149) GCGACGCG 0.53314 iYDL128W ( 461) GAGACGCG 0.763028 iYDR076W ( 355) GCAACGCG 0.811067 iYDR221W ( 106) AAAACGCG 0.673519 iYDR441C ( 287) GAATCGCG 0.809818 iYDR451C ( 269) AAAGCGCG 0.642233 iYDR500C ( 266) CAAACGCG 0.814309 iYDR525W ( 157) GCAACGCG 0.720816 iYEL041W ( 382) GAAGCGCG 0.868166 iYER069W ( 505) AAAACGCG 0.52222 iYGL179C-1 ( 13) AAAACGCG 0.574842 iYGR152C ( 286) TTGACGCG 0.592139 iYGR189C ( 412) AAAACGCG 0.878949 iYGR221C ( 230) CGAACGCG 0.808808 iYGR279C ( 422) GTGTCGCG 0.596264 iYHR061C ( 298) GCGTCGCG 0.956444 iYIL124W ( 196) GAAACGCG 0.884623 iYIL142W ( 95) AAGACGCG 0.558011 iYJL187C ( 254) GCGTCGCG 0.907553 iYJL196C ( 338) GCGACGCG 0.673451 iYJR053W ( 86) GAATCGTG 0.662869 iYKL008C ( 541) GCGTCGCG 0.893813 iYLR084C ( 210) GTATCGCG 0.877737 iYLR110C ( 219) GCAACACG 0.854945 iYLR183C ( 29) GTGTCGTG 0.91417 iYLR299W ( 222) GAGACGCG 0.770545 iYLR341W ( 540) GTAACGCG 0.684384 iYML028W ( 240) GAGACGCG 0.589859 iYMR016C-1 ( 726) GAAGCGCG 0.731829 iYMR198W ( 507) GAGACGCG 0.777304 iYMR305C ( 336) CAAACGCG 0.599276 iYNL231C ( 360) GCAACGCG 0.794892 iYNL299W ( 136) CAAACGCG 0.923697 iYNL301C ( 779) GTGACGCG 0.548627 iYNR008W ( 60) GCGTCGCG 0.703965 iYOL007C ( 386) AAAACGCG 0.848079 iYOL114C ( 111) AAGACACG 0.668694 iYOR246C ( 294) AAGACGCG 0.748117 iYOR248W ( 5) CAAACGTG 0.768346 iYOR342C ( 480) AAAACGCG 0.746679 iYOR372C ( 158) GCGTCCCG 0.683453 iYPL056C ( 47) CTGACACG 0.5681 iYPL163C ( 243) GCGTCGCG 0.844546 YDR525W-A ( 184) GAGGCCCG 0.790718 // --------------------------------------------------------------------- Possible examples of motif 1 in the training set --------------------------------------------------------------------- Sequence name Start Score Site ------------- ----- ----- -------- itY(GUA)O 217 10.18 GAAACAATTC GCGTCGCG TGGGCGCCGA iYBR077C 317 10.40 AAAAACGGGA AAGACGCG CCACCGTTTC iYBR162C 468 9.96 AGGAAAGTCG CCAACGCG AAAAGAAAAG iYCR063W 136 10.43 AAAAACAAAA CAGACGCG AGAACGCGAC iYCR063W 149 11.14 ACGCGAGAAC GCGACGCG AAAAAATATA iYCR063W 247 10.27 AACACTGACT AAAACGCG TCCTCATTTA iYDL004W 798 10.31 AAATGTTCTT CAAACGCG TTTATTATAT iYDL128W 461 11.49 AATAGATCAT GAGACGCG AAGCCCTATT iYDR076W 355 11.01 CAATGTACTT GCAACGCG GCGACTTAAA iYDR221W 106 10.27 TCCCTCGGCC AAAACGCG AAAAGACGAT iYDR441C 287 10.40 AATTGAAAAA GAATCGCG ACTTCCGATT iYDR500C 266 10.31 AATGATAATC CAAACGCG ATAATTTTTT iYDR525W 157 11.01 CCGGTGAGGG GCAACGCG CATTGTCCCG iYEL041W 382 9.54 CGATTAGGAA GAAGCGCG AAAATTCTTG iYER069W 505 10.27 TTAAAAAGAA AAAACGCG TAAACAGTGT iYER111C 501 10.15 GTCATGGTTA GTGACGCG TCACTTCAAA iYER111C 515 10.31 CGCGTCACTT CAAACGCG GGTAACAAAA iYGL179C-1 13 10.27 AAATGCCAAA AAAACGCG AAACGCCGCA iYGR189C 412 10.27 ATGGGCTGGG AAAACGCG TCATCAATTC iYHR061C 298 10.18 TCGCGAATTC GCGTCGCG ATTCGTGGAT iYIL124W 196 11.36 CTTACCGTTT GAAACGCG CTGGGACGGA iYIL142W 95 10.40 ATATAATTCA AAGACGCG AAAAAAAAAG iYIL142W 114 9.93 AAAAAAAAGA ACAACGCG TCATAGAACT iYJL187C 254 10.18 CATTTTTTTC GCGTCGCG TCGCAAATTG iYJL196C 149 10.09 ATCCGTAAAG CCGACGCG GGTAAGCCAA iYJL196C 338 11.14 AAAGAAGAAA GCGACGCG AGGCCTCACG iYKL008C 541 10.18 TTTTTTTTTC GCGTCGCG TTTTTTCACA iYLR299W 222 11.49 CCTTGCAGCC GAGACGCG ACTTCGGAAC iYLR330W 281 10.27 GCGCTCTACG AAAACGCG AAATTATTCA iYLR341W 540 10.02 CTCCTTCCGT GTAACGCG TTATGAAACT iYML028W 179 10.27 GTCTGGCTCT AAAACGCG TAAACCATTC iYML028W 240 11.49 TTCATACGCT GAGACGCG ACGCTTCTTT iYML028W 445 10.31 GTGGAAACTT CAAACGCG AACAATCTGT iYMR016C-1 726 9.54 CAACCTTTTT GAAGCGCG TATTTACCAC iYMR198W 507 11.49 CAGCCTGCAA GAGACGCG TTCAAGGAAG iYMR305C 336 10.31 GAATAACTTT CAAACGCG TGCGACGTTT iYNL231C 360 11.01 AAGATGACGC GCAACGCG AAAATCGCTT iYNL283C 621 10.27 AAAACAGGAA AAAACGCG AAATGTCCGT iYNL283C 697 9.96 GCTGTTCTGG CCAACGCG ACAGCAGGGT iYNL299W 136 10.31 CTAATGATAT CAAACGCG TGGGTATTTT iYNL301C 779 10.15 GCACAAAGAA GTGACGCG AAAATGACGG iYNR008W 60 10.18 AAAAGAAGGC GCGTCGCG TCGACGCGCC iYOL007C 386 10.27 TTACACGCAG AAAACGCG AAAACCGCCA iYOR246C 294 10.40 TGGGGCTTAG AAGACGCG AAAGACCTGT iYOR342C 480 10.27 AAACCCGTAG AAAACGCG AAAAGCCGCT iYPL163C 243 10.18 CCAATTATTA GCGTCGCG AATTGAATAT --------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 53238 bayes= 9.52751 -0.091 -0.057 0.995 -2.018 0.728 0.382 -1.745 -0.605 0.808 -4.397 0.935 -2.188 0.979 -2.256 -0.843 0.017 -3.155 2.035 -3.518 -2.803 -1.421 -2.052 1.832 -3.338 -5.123 1.931 -1.906 -1.669 -4.359 -3.359 2.050 -3.981 letter-probability matrix: alength= 4 w= 8 n= 53238 0.264579 0.213387 0.456026 0.066008 0.466736 0.289227 0.068279 0.175757 0.493170 0.010536 0.437623 0.058671 0.555454 0.046475 0.127583 0.270488 0.031629 0.910083 0.019974 0.038314 0.105256 0.053529 0.814781 0.026435 0.008084 0.846765 0.061069 0.084083 0.013732 0.021642 0.947700 0.016926 Time 101.35 secs. ******************************************************************************** MOTIF 2 width = 8 sites = 71.6 ******************************************************************************** Simplified A 1::::::1 motif letter- C :::626:1 probability G ::::4:41 matrix T 9aa44457 bits 2.2 2.0 1.7 1.5 ** Information 1.3 ** content 1.1 *** (8.3 bits) 0.9 **** * 0.7 **** *** 0.4 **** *** 0.2 ******** 0.0 -------- Multilevel TTTCTCTT consensus TGTG sequence C -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=8 seqs=77 iYBR070C ( 166) TTTCGCGT 0.612329 iYDL004W ( 837) TTTCGCGT 0.754875 iYDL055C-0 ( 535) TTTCGCGT 0.640863 iYDR500C ( 284) TTTCGCGT 0.602004 iYER069W ( 708) TTTCGTGT 0.763663 iYGL179C-0 ( 728) TTTCGCGT 0.663626 iYGR152C ( 252) TTTCGCGT 0.527632 iYGR189C ( 49) TTTCTCTT 0.575952 iYGR221C ( 266) TTTCGCGA 0.642745 iYIL124W ( 829) TTTCGCGT 0.534425 iYIL142W ( 139) ATTCGCGT 0.931664 iYJL079C ( 218) TTTCGGGT 0.590404 iYJL196C ( 113) TTTCCCTT 0.632731 iYJR053W ( 111) TTTCGCGT 0.59962 iYLR111W ( 18) ATTCCCGC 0.633297 iYLR183C ( 4) CTTCTTGT 0.614142 iYML028W ( 270) TTTCCCTT 0.654828 iYNL231C ( 3) TTTTGCTT 0.596724 iYNL279W ( 76) TTTCGCGT 0.718995 iYNL283C ( 866) TTTCTCGT 0.538465 iYNL290W ( 331) TTTCGTGT 0.518763 iYNL299W ( 151) TTTCCCTT 0.52018 iYNR008W ( 199) ATTTGCTT 0.512574 iYOL114C ( 20) TTTCCCTT 0.609061 TEL15R-1 ( 112) TTTTGCGT 0.589685 YDR525W-A ( 126) TTTCCCTG 0.554666 // --------------------------------------------------------------------- Possible examples of motif 2 in the training set --------------------------------------------------------------------- Sequence name Start Score Site ------------- ----- ----- -------- itY(GUA)O 187 11.18 CTGTACGCAA TTTCTCTT ATCCTACCGT iYBR070C 110 10.43 CTAAGAACAT TTTTGCTT CTGGACAGAC iYBR070C 166 11.31 TACGACTAAC TTTCGCGT AGGGGTAAAA iYBR077C 45 9.54 GATAACTGCC TTTTTTTT TTTTCTTCTT iYBR077C 46 9.54 ATAACTGCCT TTTTTTTT TTTCTTCTTA iYBR077C 47 9.54 TAACTGCCTT TTTTTTTT TTCTTCTTAT iYBR077C 48 9.54 AACTGCCTTT TTTTTTTT TCTTCTTATC iYBR077C 49 9.54 ACTGCCTTTT TTTTTTTT CTTCTTATCT iYBR077C 52 10.32 GCCTTTTTTT TTTTTCTT CTTATCTTCC iYBR077C 122 10.32 GAAGCAATTG TTTTTCTT TTTCTTCGTC iYBR077C 124 10.40 AGCAATTGTT TTTCTTTT TCTTCGTCTC iYBR077C 128 10.32 ATTGTTTTTC TTTTTCTT CGTCTCTCTC iYBR077C 634 11.18 CTTTTCACCC TTTCTCTT CTTTTTAGAA iYBR077C 744 10.32 ATCTTTTCCA TTTTTCTT TCAACAAGTC iYBR162C 3 10.34 TT TTTTTCGT TCAAATTCCG iYBR162C 546 10.32 GACGTGGCTT TTTTTCTT GTCGCCATCT iYBR162C 548 10.42 CGTGGCTTTT TTTCTTGT CGCCATCTGC iYCR063W 168 9.72 AAAAATATAT TTTTCCGT TTTTTTTTTT iYCR063W 175 9.54 TATTTTTCCG TTTTTTTT TTTTTTCGGA iYCR063W 176 9.54 ATTTTTCCGT TTTTTTTT TTTTTCGGAA iYCR063W 177 9.54 TTTTTCCGTT TTTTTTTT TTTTCGGAAC iYCR063W 178 9.54 TTTTCCGTTT TTTTTTTT TTTCGGAACA iYCR063W 179 9.54 TTTCCGTTTT TTTTTTTT TTCGGAACAA iYCR063W 180 9.54 TTCCGTTTTT TTTTTTTT TCGGAACAAA iYCR063W 181 9.54 TCCGTTTTTT TTTTTTTT CGGAACAAAG iYDL004W 837 11.31 AATTCAAATT TTTCGCGT TTGAAAATTT iYDL055C-0 59 9.65 GCTGATAATA TTTTGTTT GTATAGTCAA iYDL055C-0 509 10.40 ACGGTGGCCG TTTCTTTT GGCGTTTTTT iYDL055C-0 521 9.54 TCTTTTGGCG TTTTTTTT TTCTGTTTTC iYDL055C-0 522 9.54 CTTTTGGCGT TTTTTTTT TCTGTTTTCG iYDL055C-0 523 9.54 TTTTGGCGTT TTTTTTTT CTGTTTTCGC iYDL055C-0 535 11.31 TTTTTTCTGT TTTCGCGT TCTTCATGCT iYDL128W 35 9.54 CACCATTCTC TTTTTTTT TATATTTTAT iYDL128W 36 9.54 ACCATTCTCT TTTTTTTT ATATTTTATC iYDL128W 414 10.51 CACAACAGAA TTTCGTTT TGTAGTATAG iYDL128W 910 10.32 CTTAAGTGTT TTTTTCTT TAGTCTTATA iYDR076W 794 9.56 TTGAAAATGA TTTTTTGT CCACTAATTT iYDR221W 258 9.72 TAATGCTAAT TTTTCCGT CTAGCCGATG iYDR221W 291 9.54 GCGGCTTTTA TTTTTTTT TTTTTTTTTT iYDR221W 292 9.54 CGGCTTTTAT TTTTTTTT TTTTTTTTTT iYDR221W 293 9.54 GGCTTTTATT TTTTTTTT TTTTTTTTTC iYDR221W 294 9.54 GCTTTTATTT TTTTTTTT TTTTTTTTCT iYDR221W 295 9.54 CTTTTATTTT TTTTTTTT TTTTTTTCTC iYDR221W 296 9.54 TTTTATTTTT TTTTTTTT TTTTTTCTCA iYDR221W 297 9.54 TTTATTTTTT TTTTTTTT TTTTTCTCAT iYDR221W 298 9.54 TTATTTTTTT TTTTTTTT TTTTCTCATC iYDR221W 299 9.54 TATTTTTTTT TTTTTTTT TTTCTCATCT iYDR221W 300 9.54 ATTTTTTTTT TTTTTTTT TTCTCATCTT iYDR221W 301 9.54 TTTTTTTTTT TTTTTTTT TCTCATCTTT iYDR221W 302 9.54 TTTTTTTTTT TTTTTTTT CTCATCTTTG iYDR309C 184 10.40 ACATTTTCAG TTTCTTTT TCGGATGCGA iYDR309C 466 10.40 AAAGAAGGAA TTTCTTTT TCTGGAATAT iYDR309C 570 10.40 GTCAATCATG TTTCTTTT CTCGTGTAGG iYDR309C 575 11.20 TCATGTTTCT TTTCTCGT GTAGGTTAAT iYDR309C 618 10.45 GCGGTATGCT TTTTGCGT TTTTTGCTAT iYDR309C 854 9.67 CGGTCCATTA TTTTGTGT TTTTTTTATT iYDR309C 861 9.54 TTATTTTGTG TTTTTTTT ATTTTTTTTT iYDR309C 870 9.54 GTTTTTTTTA TTTTTTTT TATTTTTCAT iYDR309C 871 9.54 TTTTTTTTAT TTTTTTTT ATTTTTCATT iYDR441C 495 9.65 CCGCTTCCGG TTTTGTTT TTATAAATCC iYDR451C 19 9.67 ATATACGATA TTTTGTGT TATTGTTATT iYDR451C 594 9.54 CAGATCAATA TTTTTTTT GGTTGTTGGG iYDR500C 278 9.54 AACGCGATAA TTTTTTTT TCGCGTTTGT iYDR500C 279 9.54 ACGCGATAAT TTTTTTTT CGCGTTTGTT iYDR500C 284 11.31 ATAATTTTTT TTTCGCGT TTGTTTTTGT iYDR500C 296 9.65 TCGCGTTTGT TTTTGTTT CAGAAGAATA iYDR500C 408 9.54 TATAGAAGCG TTTTTTTT TTTGGTATAC iYDR500C 409 9.54 ATAGAAGCGT TTTTTTTT TTGGTATACT iYDR500C 410 9.54 TAGAAGCGTT TTTTTTTT TGGTATACTA iYDR500C 411 9.54 AGAAGCGTTT TTTTTTTT GGTATACTAT iYDR507C 634 9.54 TTTCTTCAAG TTTTTTTT TTTTTTTTTG iYDR507C 635 9.54 TTCTTCAAGT TTTTTTTT TTTTTTTTGA iYDR507C 636 9.54 TCTTCAAGTT TTTTTTTT TTTTTTTGAA iYDR507C 637 9.54 CTTCAAGTTT TTTTTTTT TTTTTTGAAT iYDR507C 638 9.54 TTCAAGTTTT TTTTTTTT TTTTTGAATC iYDR507C 639 9.54 TCAAGTTTTT TTTTTTTT TTTTGAATCG iYDR507C 640 9.54 CAAGTTTTTT TTTTTTTT TTTGAATCGT iYDR507C 641 9.54 AAGTTTTTTT TTTTTTTT TTGAATCGTG iYDR507C 642 9.54 AGTTTTTTTT TTTTTTTT TGAATCGTGA iYDR507C 643 9.54 GTTTTTTTTT TTTTTTTT GAATCGTGAT iYDR525W 228 9.80 TCTTTCCCCT TTTCCTGT CTCCTATTGT iYDR525W-A 71 9.54 TTTGCTACCC TTTTTTTT TCATTTCTTT iYDR525W-A 72 9.54 TTGCTACCCT TTTTTTTT CATTTCTTTC iYDR525W-A 86 10.40 TTTTCATTTC TTTCTTTT TTTTCTATTT iYDR525W-A 90 9.54 CATTTCTTTC TTTTTTTT CTATTTTATT iYDR525W-A 107 10.32 TCTATTTTAT TTTTTCTT TTTCATTTTT iYDR525W-A 109 10.40 TATTTTATTT TTTCTTTT TCATTTTTCG iYER069W 708 10.53 GCGTAGGTAG TTTCGTGT TTGATAGAAA iYER111C 249 10.40 CACTAAAGAG TTTCTTTT TTTATTATCT iYER111C 412 9.54 CTTGTTCCTC TTTTTTTT TTGTTAGGTT iYER111C 413 9.54 TTGTTCCTCT TTTTTTTT TGTTAGGTTA iYER111C 414 9.54 TGTTCCTCTT TTTTTTTT GTTAGGTTAA iYER111C 416 9.56 TTCCTCTTTT TTTTTTGT TAGGTTAACC iYER111C 485 11.31 TATAATTAAC TTTCGCGT CATGGTTAGT iYER111C 936 9.54 GGGTAGCATC TTTTTTTT AATAGATAGT iYER111C 1024 9.70 AAAGTACTAC TTTTCCTT TACCGCCAGT iYER111C 1025 9.79 AAGTACTACT TTTCCTTT ACCGCCAGTT iYER111C 1041 9.80 TTACCGCCAG TTTCCTGT ACTATGAAAA iYGL179C-0 298 10.43 AACAGCCATA TTTTGCTT GCTGAAGGAC iYGL179C-0 728 11.31 CTAGGTCGTC TTTCGCGT GGGCTATCGC iYGL179C-1 82 10.40 AATATTGGCC TTTCTTTT CCTAAAGCAA iYGL179C-1 372 10.32 CGATTGCCTC TTTTTCTT TACCGTTTAT iYGL179C-1 462 9.54 AGATTCCTTA TTTTTTTT CTTCTTTCGC iYGL179C-1 465 10.32 TTCCTTATTT TTTTTCTT CTTTCGCCAG iYGL179C-1 563 10.42 TGAAATCAGT TTTCTTGT GATCATTCTT iYGL179C-1 699 9.79 TAATAGGTGG TTTCCTTT CAATATATAT iYGL179C-1 1124 11.18 ATTTTTCCAG TTTCTCTT A iYGR040W 170 9.54 CGGCAACAAG TTTTTTTT TTTCGCCAGC iYGR040W 171 9.54 GGCAACAAGT TTTTTTTT TTCGCCAGCA iYGR040W 172 9.54 GCAACAAGTT TTTTTTTT TCGCCAGCAG iYGR040W 173 9.54 CAACAAGTTT TTTTTTTT CGCCAGCAGA iYGR040W 403 9.65 TAAGTAGAAG TTTTGTTT ACTGGGTTTG iYGR040W 860 10.43 TTCTAAAGCT TTTTGCTT AGGCATACCA iYGR040W 903 9.54 TAACACCTTA TTTTTTTT TTCGAAGACA iYGR040W 904 9.54 AACACCTTAT TTTTTTTT TCGAAGACAG iYGR040W 905 9.54 ACACCTTATT TTTTTTTT CGAAGACAGC iYGR040W 947 9.54 GTTCACTACC TTTTTTTT TACAACAATT iYGR040W 948 9.54 TTCACTACCT TTTTTTTT ACAACAATTT iYGR152C 201 10.32 CTACTTTACT TTTTTCTT TTTCTGTCCT iYGR152C 203 10.40 ACTTTACTTT TTTCTTTT TCTGTCCTTC iYGR152C 226 10.40 CCTTCTCTCT TTTCTTTT TAACCTTTTT iYGR152C 252 11.31 TTCGACGATA TTTCGCGT TTGAGAATGT iYGR189C 49 11.18 TATCTTAACC TTTCTCTT GCTATTTAGT iYGR279C 829 9.54 CTGGCACACA TTTTTTTT TTTCATTTTT iYGR279C 830 9.54 TGGCACACAT TTTTTTTT TTCATTTTTA iYGR279C 831 9.54 GGCACACATT TTTTTTTT TCATTTTTAT iYGR279C 832 9.54 GCACACATTT TTTTTTTT CATTTTTATT iYGR279C 854 10.32 TTTATTTGCT TTTTTCTT TGGCACCGGG iYHR061C 202 9.56 ATCCCCAAAT TTTTTTGT CTATTCGTTG iYHR061C 220 9.70 CTATTCGTTG TTTTCCTT CTCTATGGAA iYHR061C 258 9.54 AATTTCTTTG TTTTTTTT TTCCTTTATT iYHR061C 259 9.54 ATTTCTTTGT TTTTTTTT TCCTTTATTG iYHR061C 260 9.54 TTTCTTTGTT TTTTTTTT CCTTTATTGT iYHR061C 264 9.70 TTTGTTTTTT TTTTCCTT TATTGTTGTT iYHR061C 265 9.79 TTGTTTTTTT TTTCCTTT ATTGTTGTTG iYIL124W 243 9.54 TGCTTTGTTG TTTTTTTT TTTTCAAAAT iYIL124W 244 9.54 GCTTTGTTGT TTTTTTTT TTTCAAAATT iYIL124W 245 9.54 CTTTGTTGTT TTTTTTTT TTCAAAATTG iYIL124W 246 9.54 TTTGTTGTTT TTTTTTTT TCAAAATTGC iYIL124W 247 9.54 TTGTTGTTTT TTTTTTTT CAAAATTGCC iYIL124W 829 11.31 TTTTTTGGCG TTTCGCGT CAGTCAATAG iYIL124W 965 9.67 TTTGGAAAGG TTTTGTGT AAGAAAAGCA iYJL158C 190 9.65 TATTTCTTAT TTTTGTTT TTGTTTGTGG iYJL158C 196 9.65 TTATTTTTGT TTTTGTTT GTGGACGTTT iYJL158C 260 10.40 CGCTGACCCG TTTCTTTT GGGCGACCGT iYJL158C 494 10.40 CACATCGACG TTTCTTTT ACTATACAGC iYJL187C 250 11.31 TCTGCATTTT TTTCGCGT CGCGTCGCAA iYJL187C 302 11.31 AAAAAATATT TTTCGCGT CGTTATCACC iYJL187C 711 9.54 TTCTTGCGGA TTTTTTTT TTCACTTTCT iYJL187C 712 9.54 TCTTGCGGAT TTTTTTTT TCACTTTCTC iYJL187C 713 9.54 CTTGCGGATT TTTTTTTT CACTTTCTCA iYJL196C 113 10.56 GCTTCCTTTC TTTCCCTT ATGTCCTTCG iYJR053W 53 11.18 AGTACATTCA TTTCTCTT ACATTCCAAA iYJR053W 111 11.31 TTCGCCGACA TTTCGCGT CTGACAGAAA iYKL008C 477 9.79 AAGACAGTTG TTTCCTTT CCAACTATTT iYKL008C 510 9.80 TCCTGGTCTT TTTCCTGT TGAAGCCCAG iYKL008C 530 9.54 AAGCCCAGCA TTTTTTTT TTCGCGTCGC iYKL008C 531 9.54 AGCCCAGCAT TTTTTTTT TCGCGTCGCG iYKL008C 532 9.54 GCCCAGCATT TTTTTTTT CGCGTCGCGT iYKL008C 537 11.31 GCATTTTTTT TTTCGCGT CGCGTTTTTT iYKL008C 628 10.32 TATGATCCCC TTTTTCTT CCTATTGGAA iYKL097C 80 10.56 CTTTCTTGCA TTTCCCTT TCCGTATTAT iYKL102C 55 11.31 CGTCCTTATT TTTCGCGT TGTGAAATAT iYKL102C 82 10.32 TTTTTACTAA TTTTTCTT TTCGCGTGGT iYKL102C 84 10.40 TTTACTAATT TTTCTTTT CGCGTGGTCA iYKL102C 89 11.31 TAATTTTTCT TTTCGCGT GGTCATTTTC iYKL102C 103 11.31 GCGTGGTCAT TTTCGCGT TGGGTTGTTT iYKL103C 6 10.32 TTCTT TTTTTCTT AATTTTGTTG iYKL103C 275 9.54 TCCCAGATTA TTTTTTTT TTGAATTAGA iYKL103C 276 9.54 CCCAGATTAT TTTTTTTT TGAATTAGAC iYKL103C 277 9.54 CCAGATTATT TTTTTTTT GAATTAGACA iYKR011C 4 9.79 TGG TTTCCTTT CTTTGTACTT iYKR011C 567 9.54 TACTGGATTC TTTTTTTT TTTTTTTTTT iYKR011C 568 9.54 ACTGGATTCT TTTTTTTT TTTTTTTTTT iYKR011C 569 9.54 CTGGATTCTT TTTTTTTT TTTTTTTTTT iYKR011C 570 9.54 TGGATTCTTT TTTTTTTT TTTTTTTTTT iYKR011C 571 9.54 GGATTCTTTT TTTTTTTT TTTTTTTTTT iYKR011C 572 9.54 GATTCTTTTT TTTTTTTT TTTTTTTTTG iYKR011C 573 9.54 ATTCTTTTTT TTTTTTTT TTTTTTTTGG iYKR011C 574 9.54 TTCTTTTTTT TTTTTTTT TTTTTTTGGG iYKR011C 575 9.54 TCTTTTTTTT TTTTTTTT TTTTTTGGGC iYKR011C 576 9.54 CTTTTTTTTT TTTTTTTT TTTTTGGGCT iYKR011C 577 9.54 TTTTTTTTTT TTTTTTTT TTTTGGGCTA iYKR011C 578 9.54 TTTTTTTTTT TTTTTTTT TTTGGGCTAG iYKR011C 579 9.54 TTTTTTTTTT TTTTTTTT TTGGGCTAGC iYKR011C 580 9.54 TTTTTTTTTT TTTTTTTT TGGGCTAGCT iYKR011C 581 9.54 TTTTTTTTTT TTTTTTTT GGGCTAGCTA iYKR041W 118 10.40 GGAAAAGCCC TTTCTTTT CCAGATCGGG iYKR041W 265 9.70 AAAACAAAAT TTTTCCTT TTTTTCGCCT iYKR041W 266 9.79 AAACAAAATT TTTCCTTT TTTTCGCCTT iYLR084C 45 11.18 TTTTGATCGT TTTCTCTT GCGTTTCTTC iYLR084C 199 10.40 TTTCCATATA TTTCTTTT TTTGTATCGC iYLR084C 204 9.56 ATATATTTCT TTTTTTGT ATCGCGAAAA iYLR299W 297 10.40 ATACTGCGCG TTTCTTTT TATAGCATTA iYLR299W 864 9.56 GTGCCTTTGA TTTTTTGT TTACTTTCTT iYLR299W 866 9.65 GCCTTTGATT TTTTGTTT ACTTTCTTTT iYLR299W 876 10.40 TTTTGTTTAC TTTCTTTT TCTAGTTAAT iYLR330W 413 9.56 AAATGGCAAT TTTTTTGT AGGAGTTTGC iYLR330W 523 10.43 ATTTTTGCCG TTTTGCTT TCATAATCTG iYLR330W 597 9.80 TACACTCTTT TTTCCTGT GTTTGGTTTA iYLR330W 754 9.72 ATTCTTCATA TTTTCCGT TATAAGTCTT iYLR341W 366 10.40 AAGGACAAAC TTTCTTTT TGCCTATCAC iYLR341W 497 9.54 ACAAGCGCCA TTTTTTTT TCTGTATCGG iYLR341W 498 9.54 CAAGCGCCAT TTTTTTTT CTGTATCGGG iYLR341W 588 10.32 TCTCTCGAAA TTTTTCTT AACGCGTCCT iYLR341W 678 11.31 GGCGACGAAT TTTCGCGT TTTGATGAAG iYLR341W 707 10.40 ACAGGAAGAA TTTCTTTT TTTTTTGGCT iYLR341W 711 9.54 GAAGAATTTC TTTTTTTT TTGGCTTCTT iYLR341W 712 9.54 AAGAATTTCT TTTTTTTT TGGCTTCTTC iYLR341W 713 9.54 AGAATTTCTT TTTTTTTT GGCTTCTTCT iYML028W 270 10.56 TTTCATATGA TTTCCCTT CTAGGCGACA iYMR016C-0 94 9.54 ATCAAAAAGG TTTTTTTT TTTTATACAA iYMR016C-0 95 9.54 TCAAAAAGGT TTTTTTTT TTTATACAAT iYMR016C-0 96 9.54 CAAAAAGGTT TTTTTTTT TTATACAATT iYMR016C-0 97 9.54 AAAAAGGTTT TTTTTTTT TATACAATTG iYMR016C-0 98 9.54 AAAAGGTTTT TTTTTTTT ATACAATTGT iYMR016C-0 296 10.32 AAGATGAACT TTTTTCTT TTGTATCGTC iYMR016C-0 298 10.40 GATGAACTTT TTTCTTTT GTATCGTCGG iYMR016C-0 792 9.56 GGAATATGAA TTTTTTGT GTTTTTTGTT iYMR016C-0 794 9.67 AATATGAATT TTTTGTGT TTTTTGTTAA iYMR016C-0 801 9.56 ATTTTTTGTG TTTTTTGT TAACTTCTTT iYMR016C-1 157 10.53 TTTCGCATCT TTTCGTGT GGTGAATGCA iYMR016C-1 535 10.40 TATTTCCTTC TTTCTTTT CTTTGTAGTT iYMR016C-1 914 9.72 TACTTTAGAT TTTTCCGT TTGTGAATAG iYMR198W 219 9.65 ATGAATAAAC TTTTGTTT TCCTAATTCG iYMR305C 19 10.45 TGAAGACTTT TTTTGCGT TAATACTATC iYMR305C 383 9.56 TCAACGCGAA TTTTTTGT CCGCTGTTTC iYMR305C 424 11.18 TCTTGGCATT TTTCTCTT CAGGTTTTAC iYMR306C-A 49 10.45 CTGGCTATTC TTTTGCGT ACTTTTAGTT iYMR306C-A 89 9.65 GCGGCTCGCG TTTTGTTT GCTTCTTATT iYNL231C 3 10.43 TT TTTTGCTT TTGTAATTTT iYNL231C 17 9.54 GCTTTTGTAA TTTTTTTT ATATAAAGTG iYNL279W 20 9.72 TTGATAGACT TTTTCCGT CATAACTCTA iYNL279W 76 11.31 GTTCGAATCA TTTCGCGT TGAATTTGAA iYNL283C 133 10.40 CTAGATTTGT TTTCTTTT GGCGAAAAAC iYNL283C 866 11.20 TTTCTCTGAT TTTCTCGT GCGGGCAATA iYNL290W 331 10.53 CGAACAAGAA TTTCGTGT TAAAAATCGC iYNL299W 151 10.56 GCGTGGGTAT TTTCCCTT TCCGGAAATA iYNL301C 1 9.65 TTTTGTTT TTTGTTTTCT iYNL301C 6 9.56 TTTTG TTTTTTGT TTTCTTCTAA iYNL301C 8 9.65 TTTTGTT TTTTGTTT TCTTCTAATT iYNL301C 29 10.32 TCTAATTGAT TTTTTCTT TCTATTTCCT iYNL301C 41 9.79 TTTCTTTCTA TTTCCTTT GGTGAAACAG iYNL301C 126 10.32 ATTTTTTTAT TTTTTCTT CAGAATTTTA iYNL301C 228 9.67 CAAGAAAGAG TTTTGTGT GATGGCTAAT iYNL301C 414 9.54 CGTGGTCCCA TTTTTTTT TACTTTGAAT iYNL301C 415 9.54 GTGGTCCCAT TTTTTTTT ACTTTGAATT iYOL007C 55 9.80 AGTTAAAGAC TTTCCTGT TTCACCGTAA iYOL007C 170 10.32 GATGCAAATC TTTTTCTT TTTCAGCAGA iYOL007C 172 10.40 TGCAAATCTT TTTCTTTT TCAGCAGACA iYOL007C 322 10.53 GTTGACGACT TTTCGTGT AATTCTTGTC iYOL007C 352 9.54 CGCTAATTAC TTTTTTTT CGCGATCCTG iYOL007C 486 10.43 TTCCAAGTAT TTTTGCTT CCAAAACATC iYOL114C 20 10.56 TCTTGGCGTG TTTCCCTT CAATTTACTG iYOL114C 70 9.54 GATTCTGTTG TTTTTTTT TACCGTATAC iYOL114C 71 9.54 ATTCTGTTGT TTTTTTTT ACCGTATACG iYOR246C 592 11.18 TTTCTAAGTT TTTCTCTT CTGCTTCCTT iYOR246C 609 10.40 TCTGCTTCCT TTTCTTTT CACTTGGCAT iYOR246C 735 9.54 ATTTTACAAA TTTTTTTT GCTATTTGAG iYOR246C 790 9.54 CATTCCCTTG TTTTTTTT TTATTGTTTC iYOR246C 791 9.54 ATTCCCTTGT TTTTTTTT TATTGTTTCA iYOR246C 792 9.54 TTCCCTTGTT TTTTTTTT ATTGTTTCAA iYOR248W 27 9.65 TTTAAGTTCT TTTTGTTT CTTTTTTGTA iYOR248W 32 10.40 GTTCTTTTTG TTTCTTTT TTGTATCTGT iYOR248W 36 9.56 TTTTTGTTTC TTTTTTGT ATCTGTATTG iYOR314W 176 10.40 AAAAAAGTGT TTTCTTTT CGAAGTATTC iYOR314W 544 10.45 GGTAGGGGTT TTTTGCGT TACTCTGTTT iYOR314W 976 9.54 GGGTTTAAAC TTTTTTTT TTCAGCTGCG iYOR314W 977 9.54 GGTTTAAACT TTTTTTTT TCAGCTGCGA iYOR314W 978 9.54 GTTTAAACTT TTTTTTTT CAGCTGCGAA iYOR342C 2 10.32 T TTTTTCTT TTCTATCGAA iYOR342C 4 10.40 TTT TTTCTTTT CTATCGAAAA iYOR342C 319 9.54 ATGGATGAAA TTTTTTTT TTTTTTTCAC iYOR342C 320 9.54 TGGATGAAAT TTTTTTTT TTTTTTCACG iYOR342C 321 9.54 GGATGAAATT TTTTTTTT TTTTTCACGT iYOR342C 322 9.54 GATGAAATTT TTTTTTTT TTTTCACGTC iYOR342C 323 9.54 ATGAAATTTT TTTTTTTT TTTCACGTCA iYOR342C 324 9.54 TGAAATTTTT TTTTTTTT TTCACGTCAG iYOR342C 325 9.54 GAAATTTTTT TTTTTTTT TCACGTCAGA iYOR342C 326 9.54 AAATTTTTTT TTTTTTTT CACGTCAGAA iYOR342C 424 10.32 ATTTTTCAAC TTTTTCTT TTGACCGTGG iYOR342C 426 10.40 TTTTCAACTT TTTCTTTT GACCGTGGTG iYOR372C 122 9.65 GTCCTATTTG TTTTGTTT TGTTCTTGTT iYOR372C 146 9.54 TGTTTTGTTG TTTTTTTT TTTTGCGTCC iYOR372C 147 9.54 GTTTTGTTGT TTTTTTTT TTTGCGTCCC iYOR372C 148 9.54 TTTTGTTGTT TTTTTTTT TTGCGTCCCG iYOR372C 149 9.54 TTTGTTGTTT TTTTTTTT TGCGTCCCGT iYOR372C 150 9.54 TTGTTGTTTT TTTTTTTT GCGTCCCGTT iYOR372C 154 10.45 TGTTTTTTTT TTTTGCGT CCCGTTTCTT iYOR372C 166 10.40 TTGCGTCCCG TTTCTTTT CGCGAGGAGG iYOR377W-1 289 10.40 TTTTCACGCG TTTCTTTT TCAACTAGAT iYOR377W-1 596 9.54 ATGTTTCAGC TTTTTTTT CAATGGGCCA iYPL056C 75 10.32 GTTTCGCAGT TTTTTCTT TTTTCGTAGT iYPL056C 77 10.40 TTCGCAGTTT TTTCTTTT TTCGTAGTCG iYPL056C 82 10.34 AGTTTTTTCT TTTTTCGT AGTCGCTTTC iYPL056C 194 9.79 TTCCTTATAA TTTCCTTT TTCAATTTCC iYPL256C 46 10.40 AAGAAAAGAT TTTCTTTT GTATGCAAAT iYPL256C 350 9.70 CGCAGGCCTT TTTTCCTT TCCGTTTTTC iYPL256C 351 9.79 GCAGGCCTTT TTTCCTTT CCGTTTTTCA iYPL256C 576 10.53 GCGGGACGAA TTTCGTGT ACTTCCGTTG iYPL256C 972 9.67 CGCGACCCGT TTTTGTGT CGCTCGGTGA iYPRWsigma2-1 535 9.54 ATAAAATAGA TTTTTTTT AGGTTAATTT iYPRWsigma2-1 713 10.40 TTATTTATTC TTTCTTTT TTTCTTTCTT iYPRWsigma2-1 719 10.32 ATTCTTTCTT TTTTTCTT TCTTTTTGAT iYPRWsigma2-1 725 10.40 TCTTTTTTTC TTTCTTTT TGATTGAGCC iYPRWsigma2-1 826 9.70 TGAGCATCTG TTTTCCTT TTGTATTTTT iYPRWsigma2-1 827 9.79 GAGCATCTGT TTTCCTTT TGTATTTTTG TEL15R-1 112 10.45 GAAACTTCTC TTTTGCGT CACTGTTCTG --------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 53238 bayes= 9.53612 -1.900 -3.231 -4.677 1.738 -5.523 -4.771 -5.232 1.874 -5.534 -4.356 -3.898 1.856 -5.036 1.404 -3.995 0.544 -3.830 -0.045 0.682 0.574 -4.908 1.356 -3.286 0.577 -4.723 -2.881 0.960 0.943 -1.520 -1.228 -1.477 1.439 letter-probability matrix: alength= 4 w= 8 n= 53238 0.075500 0.023640 0.008947 0.891914 0.006127 0.008132 0.006090 0.979650 0.006082 0.010839 0.015356 0.967723 0.008586 0.587372 0.014356 0.389685 0.019819 0.215136 0.367198 0.397846 0.009384 0.568338 0.023465 0.398814 0.010671 0.030143 0.445266 0.513921 0.098216 0.094790 0.082193 0.724800 Time 202.49 secs. ******************************************************************************** MOTIF 3 width = 8 sites = 61.0 ******************************************************************************** Simplified A :::::::: motif letter- C 1113:::3 probability G :::::::: matrix T 89979997 bits 2.2 2.0 1.7 1.5 * Information 1.3 ** *** content 1.1 *** *** (10.2 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus C C sequence -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=8 seqs=77 itY(GUA)O ( 85) TTTTTTTC 0.629988 iYBR070C ( 15) CTTCTTTC 0.711792 iYDR451C ( 594) TTTTTTTT 0.654015 iYDR525W ( 216) TTTCTTTC 0.761202 iYEL041W ( 405) CTTTTTTC 0.640726 iYLR110C ( 170) TTTCTTTC 0.652581 iYNL231C ( 17) TTTTTTTT 0.553618 iYNL279W ( 281) CTTTTTTT 0.66957 iYNL283C ( 133) TTTCTTTT 0.578163 // --------------------------------------------------------------------- Possible examples of motif 3 in the training set --------------------------------------------------------------------- Sequence name Start Score Site ------------- ----- ----- -------- itY(GUA)O 85 12.32 TGAACAAGTA TTTTTTTC CTCTGCATCT iYBR077C 44 11.15 TGATAACTGC CTTTTTTT TTTTTCTTCT iYBR077C 45 13.36 GATAACTGCC TTTTTTTT TTTTCTTCTT iYBR077C 46 13.36 ATAACTGCCT TTTTTTTT TTTCTTCTTA iYBR077C 47 13.36 TAACTGCCTT TTTTTTTT TTCTTCTTAT iYBR077C 48 13.36 AACTGCCTTT TTTTTTTT TCTTCTTATC iYBR077C 49 13.36 ACTGCCTTTT TTTTTTTT CTTCTTATCT iYBR077C 50 12.32 CTGCCTTTTT TTTTTTTC TTCTTATCTT iYBR077C 124 12.20 AGCAATTGTT TTTCTTTT TCTTCGTCTC iYBR077C 598 11.16 TCCTCTGCAT TTTCTTTC CTTCTTTATC iYBR077C 639 9.99 CACCCTTTCT CTTCTTTT TAGAACATCA iYBR077C 746 11.16 CTTTTCCATT TTTCTTTC AACAAGTCCC iYBR162C 1 12.32 TTTTTTTC GTTCAAATTC iYBR162C 543 11.15 CTTGACGTGG CTTTTTTT CTTGTCGCCA iYBR162C 544 12.32 TTGACGTGGC TTTTTTTC TTGTCGCCAT iYCR063W 175 13.36 TATTTTTCCG TTTTTTTT TTTTTTCGGA iYCR063W 176 13.36 ATTTTTCCGT TTTTTTTT TTTTTCGGAA iYCR063W 177 13.36 TTTTTCCGTT TTTTTTTT TTTTCGGAAC iYCR063W 178 13.36 TTTTCCGTTT TTTTTTTT TTTCGGAACA iYCR063W 179 13.36 TTTCCGTTTT TTTTTTTT TTCGGAACAA iYCR063W 180 13.36 TTCCGTTTTT TTTTTTTT TCGGAACAAA iYCR063W 181 13.36 TCCGTTTTTT TTTTTTTT CGGAACAAAG iYCR063W 182 12.32 CCGTTTTTTT TTTTTTTC GGAACAAAGA iYCR063W 444 9.99 ACTATTTGAG CTTCTTTT ATTGACCGAA iYDL055C-0 509 12.20 ACGGTGGCCG TTTCTTTT GGCGTTTTTT iYDL055C-0 521 13.36 TCTTTTGGCG TTTTTTTT TTCTGTTTTC iYDL055C-0 522 13.36 CTTTTGGCGT TTTTTTTT TCTGTTTTCG iYDL055C-0 523 13.36 TTTTGGCGTT TTTTTTTT CTGTTTTCGC iYDL055C-0 524 12.32 TTTGGCGTTT TTTTTTTC TGTTTTCGCG iYDL128W 34 11.15 TCACCATTCT CTTTTTTT TTATATTTTA iYDL128W 35 13.36 CACCATTCTC TTTTTTTT TATATTTTAT iYDL128W 36 13.36 ACCATTCTCT TTTTTTTT ATATTTTATC iYDL128W 908 12.32 TTCTTAAGTG TTTTTTTC TTTAGTCTTA iYDL128W 936 11.16 TAAGTTCTCC TTTCTTTC ACTTTATAAT iYDR221W 220 12.32 ACGGCTTGTA TTTTTTTC GGAGAACTAA iYDR221W 291 13.36 GCGGCTTTTA TTTTTTTT TTTTTTTTTT iYDR221W 292 13.36 CGGCTTTTAT TTTTTTTT TTTTTTTTTT iYDR221W 293 13.36 GGCTTTTATT TTTTTTTT TTTTTTTTTC iYDR221W 294 13.36 GCTTTTATTT TTTTTTTT TTTTTTTTCT iYDR221W 295 13.36 CTTTTATTTT TTTTTTTT TTTTTTTCTC iYDR221W 296 13.36 TTTTATTTTT TTTTTTTT TTTTTTCTCA iYDR221W 297 13.36 TTTATTTTTT TTTTTTTT TTTTTCTCAT iYDR221W 298 13.36 TTATTTTTTT TTTTTTTT TTTTCTCATC iYDR221W 299 13.36 TATTTTTTTT TTTTTTTT TTTCTCATCT iYDR221W 300 13.36 ATTTTTTTTT TTTTTTTT TTCTCATCTT iYDR221W 301 13.36 TTTTTTTTTT TTTTTTTT TCTCATCTTT iYDR221W 302 13.36 TTTTTTTTTT TTTTTTTT CTCATCTTTG iYDR221W 303 12.32 TTTTTTTTTT TTTTTTTC TCATCTTTGT iYDR309C 184 12.20 ACATTTTCAG TTTCTTTT TCGGATGCGA iYDR309C 466 12.20 AAAGAAGGAA TTTCTTTT TCTGGAATAT iYDR309C 570 12.20 GTCAATCATG TTTCTTTT CTCGTGTAGG iYDR309C 861 13.36 TTATTTTGTG TTTTTTTT ATTTTTTTTT iYDR309C 870 13.36 GTTTTTTTTA TTTTTTTT TATTTTTCAT iYDR309C 871 13.36 TTTTTTTTAT TTTTTTTT ATTTTTCATT iYDR441C 48 11.15 CACGCACTCT CTTTTTTT AAGGAGCGAA iYDR451C 594 13.36 CAGATCAATA TTTTTTTT GGTTGTTGGG iYDR500C 278 13.36 AACGCGATAA TTTTTTTT TCGCGTTTGT iYDR500C 279 13.36 ACGCGATAAT TTTTTTTT CGCGTTTGTT iYDR500C 280 12.32 CGCGATAATT TTTTTTTC GCGTTTGTTT iYDR500C 408 13.36 TATAGAAGCG TTTTTTTT TTTGGTATAC iYDR500C 409 13.36 ATAGAAGCGT TTTTTTTT TTGGTATACT iYDR500C 410 13.36 TAGAAGCGTT TTTTTTTT TGGTATACTA iYDR500C 411 13.36 AGAAGCGTTT TTTTTTTT GGTATACTAT iYDR507C 634 13.36 TTTCTTCAAG TTTTTTTT TTTTTTTTTG iYDR507C 635 13.36 TTCTTCAAGT TTTTTTTT TTTTTTTTGA iYDR507C 636 13.36 TCTTCAAGTT TTTTTTTT TTTTTTTGAA iYDR507C 637 13.36 CTTCAAGTTT TTTTTTTT TTTTTTGAAT iYDR507C 638 13.36 TTCAAGTTTT TTTTTTTT TTTTTGAATC iYDR507C 639 13.36 TCAAGTTTTT TTTTTTTT TTTTGAATCG iYDR507C 640 13.36 CAAGTTTTTT TTTTTTTT TTTGAATCGT iYDR507C 641 13.36 AAGTTTTTTT TTTTTTTT TTGAATCGTG iYDR507C 642 13.36 AGTTTTTTTT TTTTTTTT TGAATCGTGA iYDR507C 643 13.36 GTTTTTTTTT TTTTTTTT GAATCGTGAT iYDR525W 216 11.16 CTTTTTCGAC TTTCTTTC CCCTTTTCCT iYDR525W-A 70 11.15 TTTTGCTACC CTTTTTTT TTCATTTCTT iYDR525W-A 71 13.36 TTTGCTACCC TTTTTTTT TCATTTCTTT iYDR525W-A 72 13.36 TTGCTACCCT TTTTTTTT CATTTCTTTC iYDR525W-A 73 12.32 TGCTACCCTT TTTTTTTC ATTTCTTTCT iYDR525W-A 82 11.16 TTTTTTTTCA TTTCTTTC TTTTTTTTCT iYDR525W-A 86 12.20 TTTTCATTTC TTTCTTTT TTTTCTATTT iYDR525W-A 89 11.15 TCATTTCTTT CTTTTTTT TCTATTTTAT iYDR525W-A 90 13.36 CATTTCTTTC TTTTTTTT CTATTTTATT iYDR525W-A 91 12.32 ATTTCTTTCT TTTTTTTC TATTTTATTT iYDR525W-A 109 12.20 TATTTTATTT TTTCTTTT TCATTTTTCG iYEL041W 405 10.11 TCTTGAAAAA CTTTTTTC AACCTCGAAG iYER069W 554 9.99 ACTTTAATTG CTTCTTTT TTTGAAATTC iYER069W 557 11.15 TTAATTGCTT CTTTTTTT GAAATTCTAA iYER069W 666 12.32 GATATGGAAA TTTTTTTC ATATAGTGTA iYER111C 134 11.15 AATAATGTAC CTTTTTTT CAAAGGGTAA iYER111C 135 12.32 ATAATGTACC TTTTTTTC AAAGGGTAAG iYER111C 249 12.20 CACTAAAGAG TTTCTTTT TTTATTATCT iYER111C 252 11.15 TAAAGAGTTT CTTTTTTT ATTATCTCGA iYER111C 411 11.15 CCTTGTTCCT CTTTTTTT TTTGTTAGGT iYER111C 412 13.36 CTTGTTCCTC TTTTTTTT TTGTTAGGTT iYER111C 413 13.36 TTGTTCCTCT TTTTTTTT TGTTAGGTTA iYER111C 414 13.36 TGTTCCTCTT TTTTTTTT GTTAGGTTAA iYER111C 935 11.15 TGGGTAGCAT CTTTTTTT TAATAGATAG iYER111C 936 13.36 GGGTAGCATC TTTTTTTT AATAGATAGT iYER111C 1192 11.16 TTATTGCAGC TTTCTTTC GTGAAATCGT iYGL179C-1 82 12.20 AATATTGGCC TTTCTTTT CCTAAAGCAA iYGL179C-1 462 13.36 AGATTCCTTA TTTTTTTT CTTCTTTCGC iYGL179C-1 463 12.32 GATTCCTTAT TTTTTTTC TTCTTTCGCC iYGL179C-1 578 11.15 TGTGATCATT CTTTTTTT CTCTCTTGCC iYGL179C-1 579 12.32 GTGATCATTC TTTTTTTC TCTCTTGCCA iYGR040W 170 13.36 CGGCAACAAG TTTTTTTT TTTCGCCAGC iYGR040W 171 13.36 GGCAACAAGT TTTTTTTT TTCGCCAGCA iYGR040W 172 13.36 GCAACAAGTT TTTTTTTT TCGCCAGCAG iYGR040W 173 13.36 CAACAAGTTT TTTTTTTT CGCCAGCAGA iYGR040W 174 12.32 AACAAGTTTT TTTTTTTC GCCAGCAGAA iYGR040W 648 12.32 GACTCCATTA TTTTTTTC ATTCTAGCAT iYGR040W 903 13.36 TAACACCTTA TTTTTTTT TTCGAAGACA iYGR040W 904 13.36 AACACCTTAT TTTTTTTT TCGAAGACAG iYGR040W 905 13.36 ACACCTTATT TTTTTTTT CGAAGACAGC iYGR040W 906 12.32 CACCTTATTT TTTTTTTC GAAGACAGCA iYGR040W 946 11.15 CGTTCACTAC CTTTTTTT TTACAACAAT iYGR040W 947 13.36 GTTCACTACC TTTTTTTT TACAACAATT iYGR040W 948 13.36 TTCACTACCT TTTTTTTT ACAACAATTT iYGR152C 171 11.15 CGCAATGGTT CTTTTTTT CGAGATCGAG iYGR152C 172 12.32 GCAATGGTTC TTTTTTTC GAGATCGAGC iYGR152C 199 10.11 CTCTACTTTA CTTTTTTC TTTTTCTGTC iYGR152C 203 12.20 ACTTTACTTT TTTCTTTT TCTGTCCTTC iYGR152C 226 12.20 CCTTCTCTCT TTTCTTTT TAACCTTTTT iYGR152C 481 12.32 CATAAAGTTG TTTTTTTC TAAAATTTAT iYGR221C 262 10.11 CATTCTTGTT CTTTTTTC GCGACTTGCT iYGR279C 829 13.36 CTGGCACACA TTTTTTTT TTTCATTTTT iYGR279C 830 13.36 TGGCACACAT TTTTTTTT TTCATTTTTA iYGR279C 831 13.36 GGCACACATT TTTTTTTT TCATTTTTAT iYGR279C 832 13.36 GCACACATTT TTTTTTTT CATTTTTATT iYGR279C 833 12.32 CACACATTTT TTTTTTTC ATTTTTATTT iYGR279C 852 10.11 TTTTTATTTG CTTTTTTC TTTGGCACCG iYHR061C 258 13.36 AATTTCTTTG TTTTTTTT TTCCTTTATT iYHR061C 259 13.36 ATTTCTTTGT TTTTTTTT TCCTTTATTG iYHR061C 260 13.36 TTTCTTTGTT TTTTTTTT CCTTTATTGT iYHR061C 261 12.32 TTCTTTGTTT TTTTTTTC CTTTATTGTT iYIL124W 243 13.36 TGCTTTGTTG TTTTTTTT TTTTCAAAAT iYIL124W 244 13.36 GCTTTGTTGT TTTTTTTT TTTCAAAATT iYIL124W 245 13.36 CTTTGTTGTT TTTTTTTT TTCAAAATTG iYIL124W 246 13.36 TTTGTTGTTT TTTTTTTT TCAAAATTGC iYIL124W 247 13.36 TTGTTGTTTT TTTTTTTT CAAAATTGCC iYIL124W 248 12.32 TGTTGTTTTT TTTTTTTC AAAATTGCCA iYIL124W 733 11.16 TTTATCTTCG TTTCTTTC TCCTGAACGA iYIL124W 817 11.15 CCGGACATGC CTTTTTTT GGCGTTTCGC iYJL158C 260 12.20 CGCTGACCCG TTTCTTTT GGGCGACCGT iYJL158C 494 12.20 CACATCGACG TTTCTTTT ACTATACAGC iYJL158C 606 12.32 CGGCTGCGAG TTTTTTTC ATTATGAACT iYJL187C 246 12.32 CTTCTCTGCA TTTTTTTC GCGTCGCGTC iYJL187C 471 11.16 AGGTGCCACA TTTCTTTC CTTAGAGGAC iYJL187C 609 9.99 AGCTCTTGGG CTTCTTTT GGTTGCCAAG iYJL187C 680 9.99 AGATAAGTGC CTTCTTTT ATCTTTTTCC iYJL187C 711 13.36 TTCTTGCGGA TTTTTTTT TTCACTTTCT iYJL187C 712 13.36 TCTTGCGGAT TTTTTTTT TCACTTTCTC iYJL187C 713 13.36 CTTGCGGATT TTTTTTTT CACTTTCTCA iYJL187C 714 12.32 TTGCGGATTT TTTTTTTC ACTTTCTCAT iYJL196C 109 11.16 TCTGGCTTCC TTTCTTTC CCTTATGTCC iYKL008C 530 13.36 AAGCCCAGCA TTTTTTTT TTCGCGTCGC iYKL008C 531 13.36 AGCCCAGCAT TTTTTTTT TCGCGTCGCG iYKL008C 532 13.36 GCCCAGCATT TTTTTTTT CGCGTCGCGT iYKL008C 533 12.32 CCCAGCATTT TTTTTTTC GCGTCGCGTT iYKL098W 569 11.15 TGCTGCTCGT CTTTTTTT GACGACCCTT iYKL102C 84 12.20 TTTACTAATT TTTCTTTT CGCGTGGTCA iYKL103C 3 11.15 TT CTTTTTTT CTTAATTTTG iYKL103C 4 12.32 TTC TTTTTTTC TTAATTTTGT iYKL103C 275 13.36 TCCCAGATTA TTTTTTTT TTGAATTAGA iYKL103C 276 13.36 CCCAGATTAT TTTTTTTT TGAATTAGAC iYKL103C 277 13.36 CCAGATTATT TTTTTTTT GAATTAGACA iYKR011C 32 9.99 GGTATTTCTT CTTCTTTT TCTAGCTGTC iYKR011C 566 11.15 TTACTGGATT CTTTTTTT TTTTTTTTTT iYKR011C 567 13.36 TACTGGATTC TTTTTTTT TTTTTTTTTT iYKR011C 568 13.36 ACTGGATTCT TTTTTTTT TTTTTTTTTT iYKR011C 569 13.36 CTGGATTCTT TTTTTTTT TTTTTTTTTT iYKR011C 570 13.36 TGGATTCTTT TTTTTTTT TTTTTTTTTT iYKR011C 571 13.36 GGATTCTTTT TTTTTTTT TTTTTTTTTT iYKR011C 572 13.36 GATTCTTTTT TTTTTTTT TTTTTTTTTG iYKR011C 573 13.36 ATTCTTTTTT TTTTTTTT TTTTTTTTGG iYKR011C 574 13.36 TTCTTTTTTT TTTTTTTT TTTTTTTGGG iYKR011C 575 13.36 TCTTTTTTTT TTTTTTTT TTTTTTGGGC iYKR011C 576 13.36 CTTTTTTTTT TTTTTTTT TTTTTGGGCT iYKR011C 577 13.36 TTTTTTTTTT TTTTTTTT TTTTGGGCTA iYKR011C 578 13.36 TTTTTTTTTT TTTTTTTT TTTGGGCTAG iYKR011C 579 13.36 TTTTTTTTTT TTTTTTTT TTGGGCTAGC iYKR011C 580 13.36 TTTTTTTTTT TTTTTTTT TGGGCTAGCT iYKR011C 581 13.36 TTTTTTTTTT TTTTTTTT GGGCTAGCTA iYKR041W 118 12.20 GGAAAAGCCC TTTCTTTT CCAGATCGGG iYKR041W 270 11.15 AAAATTTTTC CTTTTTTT CGCCTTTGTT iYKR041W 271 12.32 AAATTTTTCC TTTTTTTC GCCTTTGTTT iYLR084C 199 12.20 TTTCCATATA TTTCTTTT TTTGTATCGC iYLR084C 202 11.15 CCATATATTT CTTTTTTT GTATCGCGAA iYLR110C 170 11.16 TTTTCTCACA TTTCTTTC TGCCGTTATG iYLR299W 297 12.20 ATACTGCGCG TTTCTTTT TATAGCATTA iYLR299W 876 12.20 TTTTGTTTAC TTTCTTTT TCTAGTTAAT iYLR330W 593 10.11 TTTTTACACT CTTTTTTC CTGTGTTTGG iYLR330W 734 12.32 CAGTGGACCA TTTTTTTC TGATTCTTCA iYLR341W 366 12.20 AAGGACAAAC TTTCTTTT TGCCTATCAC iYLR341W 497 13.36 ACAAGCGCCA TTTTTTTT TCTGTATCGG iYLR341W 498 13.36 CAAGCGCCAT TTTTTTTT CTGTATCGGG iYLR341W 499 12.32 AAGCGCCATT TTTTTTTC TGTATCGGGC iYLR341W 707 12.20 ACAGGAAGAA TTTCTTTT TTTTTTGGCT iYLR341W 710 11.15 GGAAGAATTT CTTTTTTT TTTGGCTTCT iYLR341W 711 13.36 GAAGAATTTC TTTTTTTT TTGGCTTCTT iYLR341W 712 13.36 AAGAATTTCT TTTTTTTT TGGCTTCTTC iYLR341W 713 13.36 AGAATTTCTT TTTTTTTT GGCTTCTTCT iYLR341W 813 11.15 CCATTCGTTC CTTTTTTT CGATTTTTTC iYLR341W 814 12.32 CATTCGTTCC TTTTTTTC GATTTTTTCA iYLR341W 846 11.16 AAAATTCTTG TTTCTTTC TTTGTCTTAG iYML028W 251 9.99 AGACGCGACG CTTCTTTT CTTTCATATG iYML028W 256 11.16 CGACGCTTCT TTTCTTTC ATATGATTTC iYMR016C-0 94 13.36 ATCAAAAAGG TTTTTTTT TTTTATACAA iYMR016C-0 95 13.36 TCAAAAAGGT TTTTTTTT TTTATACAAT iYMR016C-0 96 13.36 CAAAAAGGTT TTTTTTTT TTATACAATT iYMR016C-0 97 13.36 AAAAAGGTTT TTTTTTTT TATACAATTG iYMR016C-0 98 13.36 AAAAGGTTTT TTTTTTTT ATACAATTGT iYMR016C-0 294 10.11 TAAAGATGAA CTTTTTTC TTTTGTATCG iYMR016C-0 298 12.20 GATGAACTTT TTTCTTTT GTATCGTCGG iYMR016C-1 535 12.20 TATTTCCTTC TTTCTTTT CTTTGTAGTT iYMR305C 15 11.15 GGAATGAAGA CTTTTTTT GCGTTAATAC iYNL231C 17 13.36 GCTTTTGTAA TTTTTTTT ATATAAAGTG iYNL231C 408 11.16 TTCCGGTTGC TTTCTTTC TCCGCGGAAT iYNL279W 281 11.15 TTGCAACATC CTTTTTTT ATAAACTTTG iYNL283C 133 12.20 CTAGATTTGT TTTCTTTT GGCGAAAAAC iYNL301C 31 11.16 TAATTGATTT TTTCTTTC TATTTCCTTT iYNL301C 302 9.99 ATATGAAATT CTTCTTTT GTTATTTTAT iYNL301C 414 13.36 CGTGGTCCCA TTTTTTTT TACTTTGAAT iYNL301C 415 13.36 GTGGTCCCAT TTTTTTTT ACTTTGAATT iYOL007C 172 12.20 TGCAAATCTT TTTCTTTT TCAGCAGACA iYOL007C 351 11.15 ACGCTAATTA CTTTTTTT TCGCGATCCT iYOL007C 352 13.36 CGCTAATTAC TTTTTTTT CGCGATCCTG iYOL007C 353 12.32 GCTAATTACT TTTTTTTC GCGATCCTGC iYOL114C 70 13.36 GATTCTGTTG TTTTTTTT TACCGTATAC iYOL114C 71 13.36 ATTCTGTTGT TTTTTTTT ACCGTATACG iYOR246C 203 11.16 CCGCATATCT TTTCTTTC AATGCCCTAC iYOR246C 609 12.20 TCTGCTTCCT TTTCTTTT CACTTGGCAT iYOR246C 735 13.36 ATTTTACAAA TTTTTTTT GCTATTTGAG iYOR246C 790 13.36 CATTCCCTTG TTTTTTTT TTATTGTTTC iYOR246C 791 13.36 ATTCCCTTGT TTTTTTTT TATTGTTTCA iYOR246C 792 13.36 TTCCCTTGTT TTTTTTTT ATTGTTTCAA iYOR248W 32 12.20 GTTCTTTTTG TTTCTTTT TTGTATCTGT iYOR314W 176 12.20 AAAAAAGTGT TTTCTTTT CGAAGTATTC iYOR314W 975 11.15 CGGGTTTAAA CTTTTTTT TTTCAGCTGC iYOR314W 976 13.36 GGGTTTAAAC TTTTTTTT TTCAGCTGCG iYOR314W 977 13.36 GGTTTAAACT TTTTTTTT TCAGCTGCGA iYOR314W 978 13.36 GTTTAAACTT TTTTTTTT CAGCTGCGAA iYOR314W 979 12.32 TTTAAACTTT TTTTTTTC AGCTGCGAAT iYOR342C 4 12.20 TTT TTTCTTTT CTATCGAAAA iYOR342C 319 13.36 ATGGATGAAA TTTTTTTT TTTTTTTCAC iYOR342C 320 13.36 TGGATGAAAT TTTTTTTT TTTTTTCACG iYOR342C 321 13.36 GGATGAAATT TTTTTTTT TTTTTCACGT iYOR342C 322 13.36 GATGAAATTT TTTTTTTT TTTTCACGTC iYOR342C 323 13.36 ATGAAATTTT TTTTTTTT TTTCACGTCA iYOR342C 324 13.36 TGAAATTTTT TTTTTTTT TTCACGTCAG iYOR342C 325 13.36 GAAATTTTTT TTTTTTTT TCACGTCAGA iYOR342C 326 13.36 AAATTTTTTT TTTTTTTT CACGTCAGAA iYOR342C 327 12.32 AATTTTTTTT TTTTTTTC ACGTCAGAAG iYOR342C 426 12.20 TTTTCAACTT TTTCTTTT GACCGTGGTG iYOR372C 146 13.36 TGTTTTGTTG TTTTTTTT TTTTGCGTCC iYOR372C 147 13.36 GTTTTGTTGT TTTTTTTT TTTGCGTCCC iYOR372C 148 13.36 TTTTGTTGTT TTTTTTTT TTGCGTCCCG iYOR372C 149 13.36 TTTGTTGTTT TTTTTTTT TGCGTCCCGT iYOR372C 150 13.36 TTGTTGTTTT TTTTTTTT GCGTCCCGTT iYOR372C 166 12.20 TTGCGTCCCG TTTCTTTT CGCGAGGAGG iYOR377W-1 289 12.20 TTTTCACGCG TTTCTTTT TCAACTAGAT iYOR377W-1 595 11.15 AATGTTTCAG CTTTTTTT TCAATGGGCC iYOR377W-1 596 13.36 ATGTTTCAGC TTTTTTTT CAATGGGCCA iYOR377W-1 597 12.32 TGTTTCAGCT TTTTTTTC AATGGGCCAC iYPL056C 77 12.20 TTCGCAGTTT TTTCTTTT TTCGTAGTCG iYPL056C 80 10.11 GCAGTTTTTT CTTTTTTC GTAGTCGCTT iYPL256C 46 12.20 AAGAAAAGAT TTTCTTTT GTATGCAAAT iYPL256C 347 10.11 TTGCGCAGGC CTTTTTTC CTTTCCGTTT iYPRWsigma2-1 535 13.36 ATAAAATAGA TTTTTTTT AGGTTAATTT iYPRWsigma2-1 713 12.20 TTATTTATTC TTTCTTTT TTTCTTTCTT iYPRWsigma2-1 716 11.15 TTTATTCTTT CTTTTTTT CTTTCTTTTT iYPRWsigma2-1 717 12.32 TTATTCTTTC TTTTTTTC TTTCTTTTTG iYPRWsigma2-1 721 11.16 TCTTTCTTTT TTTCTTTC TTTTTGATTG iYPRWsigma2-1 725 12.20 TCTTTTTTTC TTTCTTTT TGATTGAGCC TEL15R-1 239 11.15 TGTGTCGTTC CTTTTTTT CATTTTTTGG TEL15R-1 240 12.32 GTGTCGTTCC TTTTTTTC ATTTTTTGGC --------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 53238 bayes= 9.76696 -4.123 -0.580 -4.322 1.624 -4.917 -2.140 -5.109 1.804 -4.502 -1.871 -3.025 1.749 -4.613 0.252 -4.118 1.411 -3.964 -2.997 -4.274 1.818 -4.076 -3.036 -4.579 1.824 -4.209 -3.077 -3.665 1.815 -3.230 0.271 -2.581 1.312 letter-probability matrix: alength= 4 w= 8 n= 53238 0.016173 0.148545 0.011445 0.823837 0.009329 0.050379 0.006632 0.933660 0.012439 0.060705 0.028127 0.898729 0.011511 0.264480 0.013186 0.710824 0.018052 0.027811 0.011832 0.942305 0.016705 0.027059 0.009577 0.946659 0.015241 0.026304 0.018038 0.940417 0.030035 0.267983 0.038260 0.663721 Time 303.60 secs. ******************************************************************************** MOTIF 4 width = 8 sites = 41.9 ******************************************************************************** Simplified A :::::::: motif letter- C :::211:2 probability G :::::::1 matrix T 99989998 bits 2.2 2.0 1.7 1.5 * Information 1.3 *** * content 1.1 *** *** (9.9 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus sequence -------------------------------------------------------------------------------- Motif 4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 4 width=8 seqs=77 // --------------------------------------------------------------------- Possible examples of motif 4 in the training set --------------------------------------------------------------------- Sequence name Start Score Site ------------- ----- ----- -------- itY(GUA)O 85 11.67 TGAACAAGTA TTTTTTTC CTCTGCATCT iYBR077C 45 13.59 GATAACTGCC TTTTTTTT TTTTCTTCTT iYBR077C 46 13.59 ATAACTGCCT TTTTTTTT TTTCTTCTTA iYBR077C 47 13.59 TAACTGCCTT TTTTTTTT TTCTTCTTAT iYBR077C 48 13.59 AACTGCCTTT TTTTTTTT TCTTCTTATC iYBR077C 49 13.59 ACTGCCTTTT TTTTTTTT CTTCTTATCT iYBR077C 50 11.67 CTGCCTTTTT TTTTTTTC TTCTTATCTT iYBR077C 52 10.68 GCCTTTTTTT TTTTTCTT CTTATCTTCC iYBR077C 122 10.68 GAAGCAATTG TTTTTCTT TTTCTTCGTC iYBR077C 124 11.80 AGCAATTGTT TTTCTTTT TCTTCGTCTC iYBR077C 128 10.68 ATTGTTTTTC TTTTTCTT CGTCTCTCTC iYBR077C 744 10.68 ATCTTTTCCA TTTTTCTT TCAACAAGTC iYBR162C 1 11.67 TTTTTTTC GTTCAAATTC iYBR162C 544 11.67 TTGACGTGGC TTTTTTTC TTGTCGCCAT iYBR162C 546 10.68 GACGTGGCTT TTTTTCTT GTCGCCATCT iYCR063W 175 13.59 TATTTTTCCG TTTTTTTT TTTTTTCGGA iYCR063W 176 13.59 ATTTTTCCGT TTTTTTTT TTTTTCGGAA iYCR063W 177 13.59 TTTTTCCGTT TTTTTTTT TTTTCGGAAC iYCR063W 178 13.59 TTTTCCGTTT TTTTTTTT TTTCGGAACA iYCR063W 179 13.59 TTTCCGTTTT TTTTTTTT TTCGGAACAA iYCR063W 180 13.59 TTCCGTTTTT TTTTTTTT TCGGAACAAA iYCR063W 181 13.59 TCCGTTTTTT TTTTTTTT CGGAACAAAG iYCR063W 182 11.67 CCGTTTTTTT TTTTTTTC GGAACAAAGA iYDL055C-0 509 11.80 ACGGTGGCCG TTTCTTTT GGCGTTTTTT iYDL055C-0 521 13.59 TCTTTTGGCG TTTTTTTT TTCTGTTTTC iYDL055C-0 522 13.59 CTTTTGGCGT TTTTTTTT TCTGTTTTCG iYDL055C-0 523 13.59 TTTTGGCGTT TTTTTTTT CTGTTTTCGC iYDL055C-0 524 11.67 TTTGGCGTTT TTTTTTTC TGTTTTCGCG iYDL128W 35 13.59 CACCATTCTC TTTTTTTT TATATTTTAT iYDL128W 36 13.59 ACCATTCTCT TTTTTTTT ATATTTTATC iYDL128W 908 11.67 TTCTTAAGTG TTTTTTTC TTTAGTCTTA iYDL128W 910 10.68 CTTAAGTGTT TTTTTCTT TAGTCTTATA iYDR221W 220 11.67 ACGGCTTGTA TTTTTTTC GGAGAACTAA iYDR221W 291 13.59 GCGGCTTTTA TTTTTTTT TTTTTTTTTT iYDR221W 292 13.59 CGGCTTTTAT TTTTTTTT TTTTTTTTTT iYDR221W 293 13.59 GGCTTTTATT TTTTTTTT TTTTTTTTTC iYDR221W 294 13.59 GCTTTTATTT TTTTTTTT TTTTTTTTCT iYDR221W 295 13.59 CTTTTATTTT TTTTTTTT TTTTTTTCTC iYDR221W 296 13.59 TTTTATTTTT TTTTTTTT TTTTTTCTCA iYDR221W 297 13.59 TTTATTTTTT TTTTTTTT TTTTTCTCAT iYDR221W 298 13.59 TTATTTTTTT TTTTTTTT TTTTCTCATC iYDR221W 299 13.59 TATTTTTTTT TTTTTTTT TTTCTCATCT iYDR221W 300 13.59 ATTTTTTTTT TTTTTTTT TTCTCATCTT iYDR221W 301 13.59 TTTTTTTTTT TTTTTTTT TCTCATCTTT iYDR221W 302 13.59 TTTTTTTTTT TTTTTTTT CTCATCTTTG iYDR221W 303 11.67 TTTTTTTTTT TTTTTTTC TCATCTTTGT iYDR309C 184 11.80 ACATTTTCAG TTTCTTTT TCGGATGCGA iYDR309C 466 11.80 AAAGAAGGAA TTTCTTTT TCTGGAATAT iYDR309C 570 11.80 GTCAATCATG TTTCTTTT CTCGTGTAGG iYDR309C 861 13.59 TTATTTTGTG TTTTTTTT ATTTTTTTTT iYDR309C 870 13.59 GTTTTTTTTA TTTTTTTT TATTTTTCAT iYDR309C 871 13.59 TTTTTTTTAT TTTTTTTT ATTTTTCATT iYDR451C 594 13.59 CAGATCAATA TTTTTTTT GGTTGTTGGG iYDR500C 278 13.59 AACGCGATAA TTTTTTTT TCGCGTTTGT iYDR500C 279 13.59 ACGCGATAAT TTTTTTTT CGCGTTTGTT iYDR500C 280 11.67 CGCGATAATT TTTTTTTC GCGTTTGTTT iYDR500C 408 13.59 TATAGAAGCG TTTTTTTT TTTGGTATAC iYDR500C 409 13.59 ATAGAAGCGT TTTTTTTT TTGGTATACT iYDR500C 410 13.59 TAGAAGCGTT TTTTTTTT TGGTATACTA iYDR500C 411 13.59 AGAAGCGTTT TTTTTTTT GGTATACTAT iYDR507C 634 13.59 TTTCTTCAAG TTTTTTTT TTTTTTTTTG iYDR507C 635 13.59 TTCTTCAAGT TTTTTTTT TTTTTTTTGA iYDR507C 636 13.59 TCTTCAAGTT TTTTTTTT TTTTTTTGAA iYDR507C 637 13.59 CTTCAAGTTT TTTTTTTT TTTTTTGAAT iYDR507C 638 13.59 TTCAAGTTTT TTTTTTTT TTTTTGAATC iYDR507C 639 13.59 TCAAGTTTTT TTTTTTTT TTTTGAATCG iYDR507C 640 13.59 CAAGTTTTTT TTTTTTTT TTTGAATCGT iYDR507C 641 13.59 AAGTTTTTTT TTTTTTTT TTGAATCGTG iYDR507C 642 13.59 AGTTTTTTTT TTTTTTTT TGAATCGTGA iYDR507C 643 13.59 GTTTTTTTTT TTTTTTTT GAATCGTGAT iYDR525W-A 71 13.59 TTTGCTACCC TTTTTTTT TCATTTCTTT iYDR525W-A 72 13.59 TTGCTACCCT TTTTTTTT CATTTCTTTC iYDR525W-A 73 11.67 TGCTACCCTT TTTTTTTC ATTTCTTTCT iYDR525W-A 86 11.80 TTTTCATTTC TTTCTTTT TTTTCTATTT iYDR525W-A 90 13.59 CATTTCTTTC TTTTTTTT CTATTTTATT iYDR525W-A 91 11.67 ATTTCTTTCT TTTTTTTC TATTTTATTT iYDR525W-A 107 10.68 TCTATTTTAT TTTTTCTT TTTCATTTTT iYDR525W-A 109 11.80 TATTTTATTT TTTCTTTT TCATTTTTCG iYER069W 666 11.67 GATATGGAAA TTTTTTTC ATATAGTGTA iYER111C 135 11.67 ATAATGTACC TTTTTTTC AAAGGGTAAG iYER111C 249 11.80 CACTAAAGAG TTTCTTTT TTTATTATCT iYER111C 412 13.59 CTTGTTCCTC TTTTTTTT TTGTTAGGTT iYER111C 413 13.59 TTGTTCCTCT TTTTTTTT TGTTAGGTTA iYER111C 414 13.59 TGTTCCTCTT TTTTTTTT GTTAGGTTAA iYER111C 936 13.59 GGGTAGCATC TTTTTTTT AATAGATAGT iYGL179C-1 82 11.80 AATATTGGCC TTTCTTTT CCTAAAGCAA iYGL179C-1 372 10.68 CGATTGCCTC TTTTTCTT TACCGTTTAT iYGL179C-1 462 13.59 AGATTCCTTA TTTTTTTT CTTCTTTCGC iYGL179C-1 463 11.67 GATTCCTTAT TTTTTTTC TTCTTTCGCC iYGL179C-1 465 10.68 TTCCTTATTT TTTTTCTT CTTTCGCCAG iYGL179C-1 579 11.67 GTGATCATTC TTTTTTTC TCTCTTGCCA iYGR040W 170 13.59 CGGCAACAAG TTTTTTTT TTTCGCCAGC iYGR040W 171 13.59 GGCAACAAGT TTTTTTTT TTCGCCAGCA iYGR040W 172 13.59 GCAACAAGTT TTTTTTTT TCGCCAGCAG iYGR040W 173 13.59 CAACAAGTTT TTTTTTTT CGCCAGCAGA iYGR040W 174 11.67 AACAAGTTTT TTTTTTTC GCCAGCAGAA iYGR040W 648 11.67 GACTCCATTA TTTTTTTC ATTCTAGCAT iYGR040W 903 13.59 TAACACCTTA TTTTTTTT TTCGAAGACA iYGR040W 904 13.59 AACACCTTAT TTTTTTTT TCGAAGACAG iYGR040W 905 13.59 ACACCTTATT TTTTTTTT CGAAGACAGC iYGR040W 906 11.67 CACCTTATTT TTTTTTTC GAAGACAGCA iYGR040W 947 13.59 GTTCACTACC TTTTTTTT TACAACAATT iYGR040W 948 13.59 TTCACTACCT TTTTTTTT ACAACAATTT iYGR152C 172 11.67 GCAATGGTTC TTTTTTTC GAGATCGAGC iYGR152C 201 10.68 CTACTTTACT TTTTTCTT TTTCTGTCCT iYGR152C 203 11.80 ACTTTACTTT TTTCTTTT TCTGTCCTTC iYGR152C 226 11.80 CCTTCTCTCT TTTCTTTT TAACCTTTTT iYGR152C 481 11.67 CATAAAGTTG TTTTTTTC TAAAATTTAT iYGR279C 829 13.59 CTGGCACACA TTTTTTTT TTTCATTTTT iYGR279C 830 13.59 TGGCACACAT TTTTTTTT TTCATTTTTA iYGR279C 831 13.59 GGCACACATT TTTTTTTT TCATTTTTAT iYGR279C 832 13.59 GCACACATTT TTTTTTTT CATTTTTATT iYGR279C 833 11.67 CACACATTTT TTTTTTTC ATTTTTATTT iYGR279C 854 10.68 TTTATTTGCT TTTTTCTT TGGCACCGGG iYHR061C 258 13.59 AATTTCTTTG TTTTTTTT TTCCTTTATT iYHR061C 259 13.59 ATTTCTTTGT TTTTTTTT TCCTTTATTG iYHR061C 260 13.59 TTTCTTTGTT TTTTTTTT CCTTTATTGT iYHR061C 261 11.67 TTCTTTGTTT TTTTTTTC CTTTATTGTT iYIL124W 243 13.59 TGCTTTGTTG TTTTTTTT TTTTCAAAAT iYIL124W 244 13.59 GCTTTGTTGT TTTTTTTT TTTCAAAATT iYIL124W 245 13.59 CTTTGTTGTT TTTTTTTT TTCAAAATTG iYIL124W 246 13.59 TTTGTTGTTT TTTTTTTT TCAAAATTGC iYIL124W 247 13.59 TTGTTGTTTT TTTTTTTT CAAAATTGCC iYIL124W 248 11.67 TGTTGTTTTT TTTTTTTC AAAATTGCCA iYJL158C 260 11.80 CGCTGACCCG TTTCTTTT GGGCGACCGT iYJL158C 494 11.80 CACATCGACG TTTCTTTT ACTATACAGC iYJL158C 606 11.67 CGGCTGCGAG TTTTTTTC ATTATGAACT iYJL187C 246 11.67 CTTCTCTGCA TTTTTTTC GCGTCGCGTC iYJL187C 711 13.59 TTCTTGCGGA TTTTTTTT TTCACTTTCT iYJL187C 712 13.59 TCTTGCGGAT TTTTTTTT TCACTTTCTC iYJL187C 713 13.59 CTTGCGGATT TTTTTTTT CACTTTCTCA iYJL187C 714 11.67 TTGCGGATTT TTTTTTTC ACTTTCTCAT iYKL008C 530 13.59 AAGCCCAGCA TTTTTTTT TTCGCGTCGC iYKL008C 531 13.59 AGCCCAGCAT TTTTTTTT TCGCGTCGCG iYKL008C 532 13.59 GCCCAGCATT TTTTTTTT CGCGTCGCGT iYKL008C 533 11.67 CCCAGCATTT TTTTTTTC GCGTCGCGTT iYKL008C 628 10.68 TATGATCCCC TTTTTCTT CCTATTGGAA iYKL102C 82 10.68 TTTTTACTAA TTTTTCTT TTCGCGTGGT iYKL102C 84 11.80 TTTACTAATT TTTCTTTT CGCGTGGTCA iYKL103C 4 11.67 TTC TTTTTTTC TTAATTTTGT iYKL103C 6 10.68 TTCTT TTTTTCTT AATTTTGTTG iYKL103C 275 13.59 TCCCAGATTA TTTTTTTT TTGAATTAGA iYKL103C 276 13.59 CCCAGATTAT TTTTTTTT TGAATTAGAC iYKL103C 277 13.59 CCAGATTATT TTTTTTTT GAATTAGACA iYKR011C 567 13.59 TACTGGATTC TTTTTTTT TTTTTTTTTT iYKR011C 568 13.59 ACTGGATTCT TTTTTTTT TTTTTTTTTT iYKR011C 569 13.59 CTGGATTCTT TTTTTTTT TTTTTTTTTT iYKR011C 570 13.59 TGGATTCTTT TTTTTTTT TTTTTTTTTT iYKR011C 571 13.59 GGATTCTTTT TTTTTTTT TTTTTTTTTT iYKR011C 572 13.59 GATTCTTTTT TTTTTTTT TTTTTTTTTG iYKR011C 573 13.59 ATTCTTTTTT TTTTTTTT TTTTTTTTGG iYKR011C 574 13.59 TTCTTTTTTT TTTTTTTT TTTTTTTGGG iYKR011C 575 13.59 TCTTTTTTTT TTTTTTTT TTTTTTGGGC iYKR011C 576 13.59 CTTTTTTTTT TTTTTTTT TTTTTGGGCT iYKR011C 577 13.59 TTTTTTTTTT TTTTTTTT TTTTGGGCTA iYKR011C 578 13.59 TTTTTTTTTT TTTTTTTT TTTGGGCTAG iYKR011C 579 13.59 TTTTTTTTTT TTTTTTTT TTGGGCTAGC iYKR011C 580 13.59 TTTTTTTTTT TTTTTTTT TGGGCTAGCT iYKR011C 581 13.59 TTTTTTTTTT TTTTTTTT GGGCTAGCTA iYKR041W 118 11.80 GGAAAAGCCC TTTCTTTT CCAGATCGGG iYKR041W 271 11.67 AAATTTTTCC TTTTTTTC GCCTTTGTTT iYLR084C 199 11.80 TTTCCATATA TTTCTTTT TTTGTATCGC iYLR299W 297 11.80 ATACTGCGCG TTTCTTTT TATAGCATTA iYLR299W 876 11.80 TTTTGTTTAC TTTCTTTT TCTAGTTAAT iYLR330W 734 11.67 CAGTGGACCA TTTTTTTC TGATTCTTCA iYLR341W 366 11.80 AAGGACAAAC TTTCTTTT TGCCTATCAC iYLR341W 497 13.59 ACAAGCGCCA TTTTTTTT TCTGTATCGG iYLR341W 498 13.59 CAAGCGCCAT TTTTTTTT CTGTATCGGG iYLR341W 499 11.67 AAGCGCCATT TTTTTTTC TGTATCGGGC iYLR341W 588 10.68 TCTCTCGAAA TTTTTCTT AACGCGTCCT iYLR341W 707 11.80 ACAGGAAGAA TTTCTTTT TTTTTTGGCT iYLR341W 711 13.59 GAAGAATTTC TTTTTTTT TTGGCTTCTT iYLR341W 712 13.59 AAGAATTTCT TTTTTTTT TGGCTTCTTC iYLR341W 713 13.59 AGAATTTCTT TTTTTTTT GGCTTCTTCT iYLR341W 814 11.67 CATTCGTTCC TTTTTTTC GATTTTTTCA iYMR016C-0 94 13.59 ATCAAAAAGG TTTTTTTT TTTTATACAA iYMR016C-0 95 13.59 TCAAAAAGGT TTTTTTTT TTTATACAAT iYMR016C-0 96 13.59 CAAAAAGGTT TTTTTTTT TTATACAATT iYMR016C-0 97 13.59 AAAAAGGTTT TTTTTTTT TATACAATTG iYMR016C-0 98 13.59 AAAAGGTTTT TTTTTTTT ATACAATTGT iYMR016C-0 296 10.68 AAGATGAACT TTTTTCTT TTGTATCGTC iYMR016C-0 298 11.80 GATGAACTTT TTTCTTTT GTATCGTCGG iYMR016C-1 535 11.80 TATTTCCTTC TTTCTTTT CTTTGTAGTT iYNL231C 17 13.59 GCTTTTGTAA TTTTTTTT ATATAAAGTG iYNL283C 133 11.80 CTAGATTTGT TTTCTTTT GGCGAAAAAC iYNL301C 29 10.68 TCTAATTGAT TTTTTCTT TCTATTTCCT iYNL301C 126 10.68 ATTTTTTTAT TTTTTCTT CAGAATTTTA iYNL301C 414 13.59 CGTGGTCCCA TTTTTTTT TACTTTGAAT iYNL301C 415 13.59 GTGGTCCCAT TTTTTTTT ACTTTGAATT iYOL007C 170 10.68 GATGCAAATC TTTTTCTT TTTCAGCAGA iYOL007C 172 11.80 TGCAAATCTT TTTCTTTT TCAGCAGACA iYOL007C 352 13.59 CGCTAATTAC TTTTTTTT CGCGATCCTG iYOL007C 353 11.67 GCTAATTACT TTTTTTTC GCGATCCTGC iYOL114C 70 13.59 GATTCTGTTG TTTTTTTT TACCGTATAC iYOL114C 71 13.59 ATTCTGTTGT TTTTTTTT ACCGTATACG iYOR246C 609 11.80 TCTGCTTCCT TTTCTTTT CACTTGGCAT iYOR246C 735 13.59 ATTTTACAAA TTTTTTTT GCTATTTGAG iYOR246C 790 13.59 CATTCCCTTG TTTTTTTT TTATTGTTTC iYOR246C 791 13.59 ATTCCCTTGT TTTTTTTT TATTGTTTCA iYOR246C 792 13.59 TTCCCTTGTT TTTTTTTT ATTGTTTCAA iYOR248W 32 11.80 GTTCTTTTTG TTTCTTTT TTGTATCTGT iYOR314W 176 11.80 AAAAAAGTGT TTTCTTTT CGAAGTATTC iYOR314W 976 13.59 GGGTTTAAAC TTTTTTTT TTCAGCTGCG iYOR314W 977 13.59 GGTTTAAACT TTTTTTTT TCAGCTGCGA iYOR314W 978 13.59 GTTTAAACTT TTTTTTTT CAGCTGCGAA iYOR314W 979 11.67 TTTAAACTTT TTTTTTTC AGCTGCGAAT iYOR342C 2 10.68 T TTTTTCTT TTCTATCGAA iYOR342C 4 11.80 TTT TTTCTTTT CTATCGAAAA iYOR342C 319 13.59 ATGGATGAAA TTTTTTTT TTTTTTTCAC iYOR342C 320 13.59 TGGATGAAAT TTTTTTTT TTTTTTCACG iYOR342C 321 13.59 GGATGAAATT TTTTTTTT TTTTTCACGT iYOR342C 322 13.59 GATGAAATTT TTTTTTTT TTTTCACGTC iYOR342C 323 13.59 ATGAAATTTT TTTTTTTT TTTCACGTCA iYOR342C 324 13.59 TGAAATTTTT TTTTTTTT TTCACGTCAG iYOR342C 325 13.59 GAAATTTTTT TTTTTTTT TCACGTCAGA iYOR342C 326 13.59 AAATTTTTTT TTTTTTTT CACGTCAGAA iYOR342C 327 11.67 AATTTTTTTT TTTTTTTC ACGTCAGAAG iYOR342C 424 10.68 ATTTTTCAAC TTTTTCTT TTGACCGTGG iYOR342C 426 11.80 TTTTCAACTT TTTCTTTT GACCGTGGTG iYOR372C 146 13.59 TGTTTTGTTG TTTTTTTT TTTTGCGTCC iYOR372C 147 13.59 GTTTTGTTGT TTTTTTTT TTTGCGTCCC iYOR372C 148 13.59 TTTTGTTGTT TTTTTTTT TTGCGTCCCG iYOR372C 149 13.59 TTTGTTGTTT TTTTTTTT TGCGTCCCGT iYOR372C 150 13.59 TTGTTGTTTT TTTTTTTT GCGTCCCGTT iYOR372C 166 11.80 TTGCGTCCCG TTTCTTTT CGCGAGGAGG iYOR377W-1 289 11.80 TTTTCACGCG TTTCTTTT TCAACTAGAT iYOR377W-1 596 13.59 ATGTTTCAGC TTTTTTTT CAATGGGCCA iYOR377W-1 597 11.67 TGTTTCAGCT TTTTTTTC AATGGGCCAC iYPL056C 75 10.68 GTTTCGCAGT TTTTTCTT TTTTCGTAGT iYPL056C 77 11.80 TTCGCAGTTT TTTCTTTT TTCGTAGTCG iYPL256C 46 11.80 AAGAAAAGAT TTTCTTTT GTATGCAAAT iYPRWsigma2-1 535 13.59 ATAAAATAGA TTTTTTTT AGGTTAATTT iYPRWsigma2-1 713 11.80 TTATTTATTC TTTCTTTT TTTCTTTCTT iYPRWsigma2-1 717 11.67 TTATTCTTTC TTTTTTTC TTTCTTTTTG iYPRWsigma2-1 719 10.68 ATTCTTTCTT TTTTTCTT TCTTTTTGAT iYPRWsigma2-1 725 11.80 TCTTTTTTTC TTTCTTTT TGATTGAGCC TEL15R-1 240 11.67 GTGTCGTTCC TTTTTTTC ATTTTTTGGC --------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 53238 bayes= 10.3091 -3.732 -2.461 -3.807 1.786 -4.262 -3.049 -4.375 1.825 -3.908 -2.752 -3.355 1.792 -4.079 -0.257 -3.332 1.535 -3.544 -1.643 -2.562 1.696 -3.473 -1.224 -3.961 1.694 -3.781 -2.573 -2.937 1.771 -3.263 -0.426 -2.145 1.495 letter-probability matrix: alength= 4 w= 8 n= 53238 0.021208 0.040315 0.016354 0.922123 0.014681 0.026833 0.011031 0.947455 0.018770 0.032958 0.022370 0.925902 0.016671 0.185809 0.022724 0.774797 0.024165 0.071109 0.038759 0.865968 0.025377 0.095038 0.014699 0.864885 0.020503 0.037305 0.029880 0.912312 0.029343 0.165285 0.051753 0.753618 Time 404.75 secs. ******************************************************************************** MOTIF 5 width = 8 sites = 38.7 ******************************************************************************** Simplified A :::::::2 motif letter- C :::64713 probability G ::::3:42 matrix T 9aa33354 bits 2.2 2.0 1.7 1.5 ** Information 1.3 *** content 1.1 *** (7.4 bits) 0.9 **** * 0.7 **** * 0.4 **** ** 0.2 ******* 0.0 -------- Multilevel TTTCCCTT consensus TTTGC sequence G A -------------------------------------------------------------------------------- Motif 5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 5 width=8 seqs=77 // --------------------------------------------------------------------- Possible examples of motif 5 in the training set --------------------------------------------------------------------- Sequence name Start Score Site ------------- ----- ----- -------- iYJL196C 113 10.57 GCTTCCTTTC TTTCCCTT ATGTCCTTCG iYKL097C 80 10.57 CTTTCTTGCA TTTCCCTT TCCGTATTAT iYML028W 270 10.57 TTTCATATGA TTTCCCTT CTAGGCGACA iYNL299W 151 10.57 GCGTGGGTAT TTTCCCTT TCCGGAAATA iYOL114C 20 10.57 TCTTGGCGTG TTTCCCTT CAATTTACTG --------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 53238 bayes= 10.4247 -3.180 -3.781 -4.003 1.812 -4.570 -4.019 -3.820 1.842 -4.491 -3.795 -4.135 1.842 -4.221 1.549 -2.610 0.156 -3.276 0.724 0.368 0.208 -3.789 1.604 -3.577 0.095 -2.823 -1.567 0.890 0.787 -0.272 0.193 -0.533 0.407 letter-probability matrix: alength= 4 w= 8 n= 53238 0.031098 0.016151 0.014274 0.938477 0.011863 0.013695 0.016207 0.958235 0.012532 0.016000 0.013030 0.958437 0.015111 0.649492 0.037494 0.297903 0.029093 0.366753 0.295370 0.308784 0.020377 0.674926 0.019183 0.285514 0.039814 0.074914 0.424130 0.461142 0.233432 0.253871 0.158233 0.354464 Time 505.88 secs. ******************************************************************************** MOTIF 6 width = 8 sites = 40.0 ******************************************************************************** Simplified A :::::::1 motif letter- C 1:::2262 probability G ::::23:4 matrix T 9a9a6533 bits 2.2 2.0 1.7 1.5 * * Information 1.3 **** content 1.1 **** (7.9 bits) 0.9 **** 0.7 **** * 0.4 ***** * 0.2 ******* 0.0 -------- Multilevel TTTTTTCG consensus CGTT sequence -------------------------------------------------------------------------------- Motif 6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 6 width=8 seqs=77 iYJR053W ( 99) TTTTCGCC 0.604275 // --------------------------------------------------------------------- Possible examples of motif 6 in the training set --------------------------------------------------------------------- Sequence name Start Score Site ------------- ----- ----- -------- iYBR070C 109 10.82 GCTAAGAACA TTTTTGCT TCTGGACAGA iYBR077C 51 11.05 TGCCTTTTTT TTTTTTCT TCTTATCTTC iYBR162C 2 11.32 T TTTTTTCG TTCAAATTCC iYBR162C 545 11.05 TGACGTGGCT TTTTTTCT TGTCGCCATC iYCR063W 183 11.32 CGTTTTTTTT TTTTTTCG GAACAAAGAT iYDL004W 1020 10.82 AAAAGTATTC TTTTTGCT ATTATTATTG iYDL055C-0 525 11.05 TTGGCGTTTT TTTTTTCT GTTTTCGCGT iYDL128W 909 11.05 TCTTAAGTGT TTTTTTCT TTAGTCTTAT iYDR221W 221 11.32 CGGCTTGTAT TTTTTTCG GAGAACTAAG iYDR221W 304 11.05 TTTTTTTTTT TTTTTTCT CATCTTTGTT iYDR309C 617 11.10 AGCGGTATGC TTTTTGCG TTTTTTGCTA iYDR309C 626 10.82 CTTTTTGCGT TTTTTGCT ATTTTGAGAC iYDR500C 281 11.32 GCGATAATTT TTTTTTCG CGTTTGTTTT iYDR525W-A 92 11.05 TTTCTTTCTT TTTTTTCT ATTTTATTTT iYDR525W-A 106 11.05 TTCTATTTTA TTTTTTCT TTTTCATTTT iYER111C 1347 11.05 CAATAGAATA TTTTTTCT CAA iYGL179C-1 464 11.05 ATTCCTTATT TTTTTTCT TCTTTCGCCA iYGL179C-1 580 11.05 TGATCATTCT TTTTTTCT CTCTTGCCAT iYGR040W 175 11.32 ACAAGTTTTT TTTTTTCG CCAGCAGAAG iYGR040W 859 10.82 TTTCTAAAGC TTTTTGCT TAGGCATACC iYGR040W 907 11.32 ACCTTATTTT TTTTTTCG AAGACAGCAT iYGR152C 173 11.32 CAATGGTTCT TTTTTTCG AGATCGAGCT iYGR152C 200 11.05 TCTACTTTAC TTTTTTCT TTTTCTGTCC iYGR152C 482 11.05 ATAAAGTTGT TTTTTTCT AAAATTTATG iYGR189C 5 10.82 TGGT TTTTTGCT GTATTGAATT iYGR221C 263 11.32 ATTCTTGTTC TTTTTTCG CGACTTGCTC iYGR279C 853 11.05 TTTTATTTGC TTTTTTCT TTGGCACCGG iYJL187C 247 11.32 TTCTCTGCAT TTTTTTCG CGTCGCGTCG iYKL008C 534 11.32 CCAGCATTTT TTTTTTCG CGTCGCGTTT iYKL103C 5 11.05 TTCT TTTTTTCT TAATTTTGTT iYKR041W 272 11.32 AATTTTTCCT TTTTTTCG CCTTTGTTTC iYLR330W 41 11.32 CGCACGTTTA TTTTTTCG ACTGAGAATC iYLR330W 735 11.05 AGTGGACCAT TTTTTTCT GATTCTTCAT iYLR341W 500 11.05 AGCGCCATTT TTTTTTCT GTATCGGGCC iYLR341W 815 11.32 ATTCGTTCCT TTTTTTCG ATTTTTTCAG iYMR016C-0 295 11.05 AAAGATGAAC TTTTTTCT TTTGTATCGT iYMR305C 18 11.10 ATGAAGACTT TTTTTGCG TTAATACTAT iYNL231C 2 10.82 T TTTTTGCT TTTGTAATTT iYNL301C 28 11.05 TTCTAATTGA TTTTTTCT TTCTATTTCC iYNL301C 125 11.05 AATTTTTTTA TTTTTTCT TCAGAATTTT iYOL007C 354 11.32 CTAATTACTT TTTTTTCG CGATCCTGCC iYOL007C 485 10.82 GTTCCAAGTA TTTTTGCT TCCAAAACAT iYOR246C 738 10.82 TTACAAATTT TTTTTGCT ATTTGAGCCA iYOR314W 543 11.10 GGGTAGGGGT TTTTTGCG TTACTCTGTT iYOR342C 1 11.05 TTTTTTCT TTTCTATCGA iYOR372C 153 11.10 TTGTTTTTTT TTTTTGCG TCCCGTTTCT iYPL056C 74 11.05 AGTTTCGCAG TTTTTTCT TTTTTCGTAG iYPL056C 81 11.32 CAGTTTTTTC TTTTTTCG TAGTCGCTTT iYPRWsigma2-1 718 11.05 TATTCTTTCT TTTTTTCT TTCTTTTTGA --------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 53238 bayes= 10.3787 -4.171 -1.688 -4.385 1.758 -4.382 -3.329 -4.277 1.833 -4.400 -2.969 -3.393 1.809 -4.515 -3.681 -4.111 1.840 -4.264 0.070 -0.499 1.143 -3.554 -0.237 0.540 0.767 -3.046 1.512 -3.032 0.190 -1.316 -0.342 0.660 0.388 letter-probability matrix: alength= 4 w= 8 n= 53238 0.015645 0.068921 0.010957 0.904477 0.013514 0.022088 0.011802 0.952596 0.013350 0.028357 0.021793 0.936501 0.012326 0.017308 0.013247 0.957120 0.014664 0.233124 0.161970 0.590242 0.023986 0.188338 0.332796 0.454881 0.034120 0.633024 0.027984 0.304872 0.113184 0.175175 0.361754 0.349886 Time 607.03 secs. ******************************************************************************** MOTIF 7 width = 8 sites = 31.9 ******************************************************************************** Simplified A :::::::: motif letter- C 1:111:11 probability G :::::::: matrix T 89999998 bits 2.2 2.0 1.7 1.5 Information 1.3 * content 1.1 ******* (9.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus sequence -------------------------------------------------------------------------------- Motif 7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 7 width=8 seqs=77 // --------------------------------------------------------------------- Possible examples of motif 7 in the training set --------------------------------------------------------------------- Sequence name Start Score Site ------------- ----- ----- -------- itY(GUA)O 85 10.72 TGAACAAGTA TTTTTTTC CTCTGCATCT iYBR077C 44 11.06 TGATAACTGC CTTTTTTT TTTTTCTTCT iYBR077C 45 13.69 GATAACTGCC TTTTTTTT TTTTCTTCTT iYBR077C 46 13.69 ATAACTGCCT TTTTTTTT TTTCTTCTTA iYBR077C 47 13.69 TAACTGCCTT TTTTTTTT TTCTTCTTAT iYBR077C 48 13.69 AACTGCCTTT TTTTTTTT TCTTCTTATC iYBR077C 49 13.69 ACTGCCTTTT TTTTTTTT CTTCTTATCT iYBR077C 50 10.72 CTGCCTTTTT TTTTTTTC TTCTTATCTT iYBR162C 1 10.72 TTTTTTTC GTTCAAATTC iYBR162C 543 11.06 CTTGACGTGG CTTTTTTT CTTGTCGCCA iYBR162C 544 10.72 TTGACGTGGC TTTTTTTC TTGTCGCCAT iYCR063W 175 13.69 TATTTTTCCG TTTTTTTT TTTTTTCGGA iYCR063W 176 13.69 ATTTTTCCGT TTTTTTTT TTTTTCGGAA iYCR063W 177 13.69 TTTTTCCGTT TTTTTTTT TTTTCGGAAC iYCR063W 178 13.69 TTTTCCGTTT TTTTTTTT TTTCGGAACA iYCR063W 179 13.69 TTTCCGTTTT TTTTTTTT TTCGGAACAA iYCR063W 180 13.69 TTCCGTTTTT TTTTTTTT TCGGAACAAA iYCR063W 181 13.69 TCCGTTTTTT TTTTTTTT CGGAACAAAG iYCR063W 182 10.72 CCGTTTTTTT TTTTTTTC GGAACAAAGA iYDL055C-0 521 13.69 TCTTTTGGCG TTTTTTTT TTCTGTTTTC iYDL055C-0 522 13.69 CTTTTGGCGT TTTTTTTT TCTGTTTTCG iYDL055C-0 523 13.69 TTTTGGCGTT TTTTTTTT CTGTTTTCGC iYDL055C-0 524 10.72 TTTGGCGTTT TTTTTTTC TGTTTTCGCG iYDL128W 34 11.06 TCACCATTCT CTTTTTTT TTATATTTTA iYDL128W 35 13.69 CACCATTCTC TTTTTTTT TATATTTTAT iYDL128W 36 13.69 ACCATTCTCT TTTTTTTT ATATTTTATC iYDL128W 908 10.72 TTCTTAAGTG TTTTTTTC TTTAGTCTTA iYDR221W 220 10.72 ACGGCTTGTA TTTTTTTC GGAGAACTAA iYDR221W 291 13.69 GCGGCTTTTA TTTTTTTT TTTTTTTTTT iYDR221W 292 13.69 CGGCTTTTAT TTTTTTTT TTTTTTTTTT iYDR221W 293 13.69 GGCTTTTATT TTTTTTTT TTTTTTTTTC iYDR221W 294 13.69 GCTTTTATTT TTTTTTTT TTTTTTTTCT iYDR221W 295 13.69 CTTTTATTTT TTTTTTTT TTTTTTTCTC iYDR221W 296 13.69 TTTTATTTTT TTTTTTTT TTTTTTCTCA iYDR221W 297 13.69 TTTATTTTTT TTTTTTTT TTTTTCTCAT iYDR221W 298 13.69 TTATTTTTTT TTTTTTTT TTTTCTCATC iYDR221W 299 13.69 TATTTTTTTT TTTTTTTT TTTCTCATCT iYDR221W 300 13.69 ATTTTTTTTT TTTTTTTT TTCTCATCTT iYDR221W 301 13.69 TTTTTTTTTT TTTTTTTT TCTCATCTTT iYDR221W 302 13.69 TTTTTTTTTT TTTTTTTT CTCATCTTTG iYDR221W 303 10.72 TTTTTTTTTT TTTTTTTC TCATCTTTGT iYDR309C 861 13.69 TTATTTTGTG TTTTTTTT ATTTTTTTTT iYDR309C 870 13.69 GTTTTTTTTA TTTTTTTT TATTTTTCAT iYDR309C 871 13.69 TTTTTTTTAT TTTTTTTT ATTTTTCATT iYDR441C 48 11.06 CACGCACTCT CTTTTTTT AAGGAGCGAA iYDR451C 594 13.69 CAGATCAATA TTTTTTTT GGTTGTTGGG iYDR500C 278 13.69 AACGCGATAA TTTTTTTT TCGCGTTTGT iYDR500C 279 13.69 ACGCGATAAT TTTTTTTT CGCGTTTGTT iYDR500C 280 10.72 CGCGATAATT TTTTTTTC GCGTTTGTTT iYDR500C 408 13.69 TATAGAAGCG TTTTTTTT TTTGGTATAC iYDR500C 409 13.69 ATAGAAGCGT TTTTTTTT TTGGTATACT iYDR500C 410 13.69 TAGAAGCGTT TTTTTTTT TGGTATACTA iYDR500C 411 13.69 AGAAGCGTTT TTTTTTTT GGTATACTAT iYDR507C 634 13.69 TTTCTTCAAG TTTTTTTT TTTTTTTTTG iYDR507C 635 13.69 TTCTTCAAGT TTTTTTTT TTTTTTTTGA iYDR507C 636 13.69 TCTTCAAGTT TTTTTTTT TTTTTTTGAA iYDR507C 637 13.69 CTTCAAGTTT TTTTTTTT TTTTTTGAAT iYDR507C 638 13.69 TTCAAGTTTT TTTTTTTT TTTTTGAATC iYDR507C 639 13.69 TCAAGTTTTT TTTTTTTT TTTTGAATCG iYDR507C 640 13.69 CAAGTTTTTT TTTTTTTT TTTGAATCGT iYDR507C 641 13.69 AAGTTTTTTT TTTTTTTT TTGAATCGTG iYDR507C 642 13.69 AGTTTTTTTT TTTTTTTT TGAATCGTGA iYDR507C 643 13.69 GTTTTTTTTT TTTTTTTT GAATCGTGAT iYDR525W-A 70 11.06 TTTTGCTACC CTTTTTTT TTCATTTCTT iYDR525W-A 71 13.69 TTTGCTACCC TTTTTTTT TCATTTCTTT iYDR525W-A 72 13.69 TTGCTACCCT TTTTTTTT CATTTCTTTC iYDR525W-A 73 10.72 TGCTACCCTT TTTTTTTC ATTTCTTTCT iYDR525W-A 89 11.06 TCATTTCTTT CTTTTTTT TCTATTTTAT iYDR525W-A 90 13.69 CATTTCTTTC TTTTTTTT CTATTTTATT iYDR525W-A 91 10.72 ATTTCTTTCT TTTTTTTC TATTTTATTT iYER069W 557 11.06 TTAATTGCTT CTTTTTTT GAAATTCTAA iYER069W 666 10.72 GATATGGAAA TTTTTTTC ATATAGTGTA iYER111C 134 11.06 AATAATGTAC CTTTTTTT CAAAGGGTAA iYER111C 135 10.72 ATAATGTACC TTTTTTTC AAAGGGTAAG iYER111C 252 11.06 TAAAGAGTTT CTTTTTTT ATTATCTCGA iYER111C 411 11.06 CCTTGTTCCT CTTTTTTT TTTGTTAGGT iYER111C 412 13.69 CTTGTTCCTC TTTTTTTT TTGTTAGGTT iYER111C 413 13.69 TTGTTCCTCT TTTTTTTT TGTTAGGTTA iYER111C 414 13.69 TGTTCCTCTT TTTTTTTT GTTAGGTTAA iYER111C 935 11.06 TGGGTAGCAT CTTTTTTT TAATAGATAG iYER111C 936 13.69 GGGTAGCATC TTTTTTTT AATAGATAGT iYGL179C-1 462 13.69 AGATTCCTTA TTTTTTTT CTTCTTTCGC iYGL179C-1 463 10.72 GATTCCTTAT TTTTTTTC TTCTTTCGCC iYGL179C-1 578 11.06 TGTGATCATT CTTTTTTT CTCTCTTGCC iYGL179C-1 579 10.72 GTGATCATTC TTTTTTTC TCTCTTGCCA iYGR040W 170 13.69 CGGCAACAAG TTTTTTTT TTTCGCCAGC iYGR040W 171 13.69 GGCAACAAGT TTTTTTTT TTCGCCAGCA iYGR040W 172 13.69 GCAACAAGTT TTTTTTTT TCGCCAGCAG iYGR040W 173 13.69 CAACAAGTTT TTTTTTTT CGCCAGCAGA iYGR040W 174 10.72 AACAAGTTTT TTTTTTTC GCCAGCAGAA iYGR040W 648 10.72 GACTCCATTA TTTTTTTC ATTCTAGCAT iYGR040W 903 13.69 TAACACCTTA TTTTTTTT TTCGAAGACA iYGR040W 904 13.69 AACACCTTAT TTTTTTTT TCGAAGACAG iYGR040W 905 13.69 ACACCTTATT TTTTTTTT CGAAGACAGC iYGR040W 906 10.72 CACCTTATTT TTTTTTTC GAAGACAGCA iYGR040W 946 11.06 CGTTCACTAC CTTTTTTT TTACAACAAT iYGR040W 947 13.69 GTTCACTACC TTTTTTTT TACAACAATT iYGR040W 948 13.69 TTCACTACCT TTTTTTTT ACAACAATTT iYGR152C 171 11.06 CGCAATGGTT CTTTTTTT CGAGATCGAG iYGR152C 172 10.72 GCAATGGTTC TTTTTTTC GAGATCGAGC iYGR152C 481 10.72 CATAAAGTTG TTTTTTTC TAAAATTTAT iYGR279C 829 13.69 CTGGCACACA TTTTTTTT TTTCATTTTT iYGR279C 830 13.69 TGGCACACAT TTTTTTTT TTCATTTTTA iYGR279C 831 13.69 GGCACACATT TTTTTTTT TCATTTTTAT iYGR279C 832 13.69 GCACACATTT TTTTTTTT CATTTTTATT iYGR279C 833 10.72 CACACATTTT TTTTTTTC ATTTTTATTT iYHR061C 258 13.69 AATTTCTTTG TTTTTTTT TTCCTTTATT iYHR061C 259 13.69 ATTTCTTTGT TTTTTTTT TCCTTTATTG iYHR061C 260 13.69 TTTCTTTGTT TTTTTTTT CCTTTATTGT iYHR061C 261 10.72 TTCTTTGTTT TTTTTTTC CTTTATTGTT iYIL124W 243 13.69 TGCTTTGTTG TTTTTTTT TTTTCAAAAT iYIL124W 244 13.69 GCTTTGTTGT TTTTTTTT TTTCAAAATT iYIL124W 245 13.69 CTTTGTTGTT TTTTTTTT TTCAAAATTG iYIL124W 246 13.69 TTTGTTGTTT TTTTTTTT TCAAAATTGC iYIL124W 247 13.69 TTGTTGTTTT TTTTTTTT CAAAATTGCC iYIL124W 248 10.72 TGTTGTTTTT TTTTTTTC AAAATTGCCA iYIL124W 817 11.06 CCGGACATGC CTTTTTTT GGCGTTTCGC iYJL158C 606 10.72 CGGCTGCGAG TTTTTTTC ATTATGAACT iYJL187C 246 10.72 CTTCTCTGCA TTTTTTTC GCGTCGCGTC iYJL187C 711 13.69 TTCTTGCGGA TTTTTTTT TTCACTTTCT iYJL187C 712 13.69 TCTTGCGGAT TTTTTTTT TCACTTTCTC iYJL187C 713 13.69 CTTGCGGATT TTTTTTTT CACTTTCTCA iYJL187C 714 10.72 TTGCGGATTT TTTTTTTC ACTTTCTCAT iYKL008C 530 13.69 AAGCCCAGCA TTTTTTTT TTCGCGTCGC iYKL008C 531 13.69 AGCCCAGCAT TTTTTTTT TCGCGTCGCG iYKL008C 532 13.69 GCCCAGCATT TTTTTTTT CGCGTCGCGT iYKL008C 533 10.72 CCCAGCATTT TTTTTTTC GCGTCGCGTT iYKL098W 569 11.06 TGCTGCTCGT CTTTTTTT GACGACCCTT iYKL103C 3 11.06 TT CTTTTTTT CTTAATTTTG iYKL103C 4 10.72 TTC TTTTTTTC TTAATTTTGT iYKL103C 275 13.69 TCCCAGATTA TTTTTTTT TTGAATTAGA iYKL103C 276 13.69 CCCAGATTAT TTTTTTTT TGAATTAGAC iYKL103C 277 13.69 CCAGATTATT TTTTTTTT GAATTAGACA iYKR011C 566 11.06 TTACTGGATT CTTTTTTT TTTTTTTTTT iYKR011C 567 13.69 TACTGGATTC TTTTTTTT TTTTTTTTTT iYKR011C 568 13.69 ACTGGATTCT TTTTTTTT TTTTTTTTTT iYKR011C 569 13.69 CTGGATTCTT TTTTTTTT TTTTTTTTTT iYKR011C 570 13.69 TGGATTCTTT TTTTTTTT TTTTTTTTTT iYKR011C 571 13.69 GGATTCTTTT TTTTTTTT TTTTTTTTTT iYKR011C 572 13.69 GATTCTTTTT TTTTTTTT TTTTTTTTTG iYKR011C 573 13.69 ATTCTTTTTT TTTTTTTT TTTTTTTTGG iYKR011C 574 13.69 TTCTTTTTTT TTTTTTTT TTTTTTTGGG iYKR011C 575 13.69 TCTTTTTTTT TTTTTTTT TTTTTTGGGC iYKR011C 576 13.69 CTTTTTTTTT TTTTTTTT TTTTTGGGCT iYKR011C 577 13.69 TTTTTTTTTT TTTTTTTT TTTTGGGCTA iYKR011C 578 13.69 TTTTTTTTTT TTTTTTTT TTTGGGCTAG iYKR011C 579 13.69 TTTTTTTTTT TTTTTTTT TTGGGCTAGC iYKR011C 580 13.69 TTTTTTTTTT TTTTTTTT TGGGCTAGCT iYKR011C 581 13.69 TTTTTTTTTT TTTTTTTT GGGCTAGCTA iYKR041W 270 11.06 AAAATTTTTC CTTTTTTT CGCCTTTGTT iYKR041W 271 10.72 AAATTTTTCC TTTTTTTC GCCTTTGTTT iYLR084C 202 11.06 CCATATATTT CTTTTTTT GTATCGCGAA iYLR330W 734 10.72 CAGTGGACCA TTTTTTTC TGATTCTTCA iYLR341W 497 13.69 ACAAGCGCCA TTTTTTTT TCTGTATCGG iYLR341W 498 13.69 CAAGCGCCAT TTTTTTTT CTGTATCGGG iYLR341W 499 10.72 AAGCGCCATT TTTTTTTC TGTATCGGGC iYLR341W 710 11.06 GGAAGAATTT CTTTTTTT TTTGGCTTCT iYLR341W 711 13.69 GAAGAATTTC TTTTTTTT TTGGCTTCTT iYLR341W 712 13.69 AAGAATTTCT TTTTTTTT TGGCTTCTTC iYLR341W 713 13.69 AGAATTTCTT TTTTTTTT GGCTTCTTCT iYLR341W 813 11.06 CCATTCGTTC CTTTTTTT CGATTTTTTC iYLR341W 814 10.72 CATTCGTTCC TTTTTTTC GATTTTTTCA iYMR016C-0 94 13.69 ATCAAAAAGG TTTTTTTT TTTTATACAA iYMR016C-0 95 13.69 TCAAAAAGGT TTTTTTTT TTTATACAAT iYMR016C-0 96 13.69 CAAAAAGGTT TTTTTTTT TTATACAATT iYMR016C-0 97 13.69 AAAAAGGTTT TTTTTTTT TATACAATTG iYMR016C-0 98 13.69 AAAAGGTTTT TTTTTTTT ATACAATTGT iYMR305C 15 11.06 GGAATGAAGA CTTTTTTT GCGTTAATAC iYNL231C 17 13.69 GCTTTTGTAA TTTTTTTT ATATAAAGTG iYNL279W 281 11.06 TTGCAACATC CTTTTTTT ATAAACTTTG iYNL301C 414 13.69 CGTGGTCCCA TTTTTTTT TACTTTGAAT iYNL301C 415 13.69 GTGGTCCCAT TTTTTTTT ACTTTGAATT iYOL007C 351 11.06 ACGCTAATTA CTTTTTTT TCGCGATCCT iYOL007C 352 13.69 CGCTAATTAC TTTTTTTT CGCGATCCTG iYOL007C 353 10.72 GCTAATTACT TTTTTTTC GCGATCCTGC iYOL114C 70 13.69 GATTCTGTTG TTTTTTTT TACCGTATAC iYOL114C 71 13.69 ATTCTGTTGT TTTTTTTT ACCGTATACG iYOR246C 735 13.69 ATTTTACAAA TTTTTTTT GCTATTTGAG iYOR246C 790 13.69 CATTCCCTTG TTTTTTTT TTATTGTTTC iYOR246C 791 13.69 ATTCCCTTGT TTTTTTTT TATTGTTTCA iYOR246C 792 13.69 TTCCCTTGTT TTTTTTTT ATTGTTTCAA iYOR314W 975 11.06 CGGGTTTAAA CTTTTTTT TTTCAGCTGC iYOR314W 976 13.69 GGGTTTAAAC TTTTTTTT TTCAGCTGCG iYOR314W 977 13.69 GGTTTAAACT TTTTTTTT TCAGCTGCGA iYOR314W 978 13.69 GTTTAAACTT TTTTTTTT CAGCTGCGAA iYOR314W 979 10.72 TTTAAACTTT TTTTTTTC AGCTGCGAAT iYOR342C 319 13.69 ATGGATGAAA TTTTTTTT TTTTTTTCAC iYOR342C 320 13.69 TGGATGAAAT TTTTTTTT TTTTTTCACG iYOR342C 321 13.69 GGATGAAATT TTTTTTTT TTTTTCACGT iYOR342C 322 13.69 GATGAAATTT TTTTTTTT TTTTCACGTC iYOR342C 323 13.69 ATGAAATTTT TTTTTTTT TTTCACGTCA iYOR342C 324 13.69 TGAAATTTTT TTTTTTTT TTCACGTCAG iYOR342C 325 13.69 GAAATTTTTT TTTTTTTT TCACGTCAGA iYOR342C 326 13.69 AAATTTTTTT TTTTTTTT CACGTCAGAA iYOR342C 327 10.72 AATTTTTTTT TTTTTTTC ACGTCAGAAG iYOR372C 146 13.69 TGTTTTGTTG TTTTTTTT TTTTGCGTCC iYOR372C 147 13.69 GTTTTGTTGT TTTTTTTT TTTGCGTCCC iYOR372C 148 13.69 TTTTGTTGTT TTTTTTTT TTGCGTCCCG iYOR372C 149 13.69 TTTGTTGTTT TTTTTTTT TGCGTCCCGT iYOR372C 150 13.69 TTGTTGTTTT TTTTTTTT GCGTCCCGTT iYOR377W-1 595 11.06 AATGTTTCAG CTTTTTTT TCAATGGGCC iYOR377W-1 596 13.69 ATGTTTCAGC TTTTTTTT CAATGGGCCA iYOR377W-1 597 10.72 TGTTTCAGCT TTTTTTTC AATGGGCCAC iYPRWsigma2-1 535 13.69 ATAAAATAGA TTTTTTTT AGGTTAATTT iYPRWsigma2-1 716 11.06 TTTATTCTTT CTTTTTTT CTTTCTTTTT iYPRWsigma2-1 717 10.72 TTATTCTTTC TTTTTTTC TTTCTTTTTG TEL15R-1 239 11.06 TGTGTCGTTC CTTTTTTT CATTTTTTGG TEL15R-1 240 10.72 GTGTCGTTCC TTTTTTTC ATTTTTTGGC --------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 53238 bayes= 10.7033 -3.478 -0.974 -3.459 1.653 -3.491 -2.608 -3.925 1.788 -3.086 -1.516 -3.715 1.705 -3.750 -1.637 -3.113 1.721 -3.448 -1.678 -3.390 1.724 -2.818 -2.209 -3.216 1.731 -3.635 -1.505 -3.668 1.721 -3.113 -1.321 -2.418 1.644 letter-probability matrix: alength= 4 w= 8 n= 53238 0.025283 0.113047 0.020817 0.840853 0.025059 0.036405 0.015065 0.923471 0.033183 0.077616 0.017430 0.871771 0.020941 0.071388 0.026445 0.881226 0.025811 0.069372 0.021833 0.882983 0.039969 0.048024 0.024629 0.887378 0.022686 0.078210 0.018005 0.881098 0.032576 0.088873 0.042819 0.835732 Time 708.21 secs. ******************************************************************************** MOTIF 8 width = 8 sites = 66.3 ******************************************************************************** Simplified A 89869999 motif letter- C 1:11:::: probability G 11:31:1: matrix T :::::::: bits 2.2 2.0 1.7 1.5 Information 1.3 * * content 1.1 * **** (8.8 bits) 0.9 *** **** 0.7 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAAAAAAA consensus G sequence -------------------------------------------------------------------------------- Motif 8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 8 width=8 seqs=77 itY(GUA)O ( 258) GAAGAAAA 0.52764 iYDR525W-A ( 229) AAAGAAGA 0.783819 iYGR040W ( 248) AGAGAAAA 0.599837 iYHR061C ( 83) AAAAAAAA 0.861478 iYPL163C ( 444) AAAAAAAA 0.606855 iYPRWsigma2-1 ( 507) AAAAAAAA 0.529125 // --------------------------------------------------------------------- Possible examples of motif 8 in the training set --------------------------------------------------------------------- Sequence name Start Score Site ------------- ----- ----- -------- iYBR070C 203 12.47 GCGCGTAATT AAAAAAAA AAGCACAGCA iYBR070C 204 12.47 CGCGTAATTA AAAAAAAA AGCACAGCAG iYBR070C 205 12.47 GCGTAATTAA AAAAAAAA GCACAGCAGT iYBR077C 221 9.68 CCGTAAACCG CAAAAAAA AAAGGATGGC iYBR077C 222 12.47 CGTAAACCGC AAAAAAAA AAGGATGGCG iYBR077C 223 12.47 GTAAACCGCA AAAAAAAA AGGATGGCGG iYBR077C 224 12.47 TAAACCGCAA AAAAAAAA GGATGGCGGG iYBR162C 174 12.47 ATTATAATAT AAAAAAAA ATTGAATGGA iYBR162C 175 12.47 TTATAATATA AAAAAAAA TTGAATGGAG iYBR162C 426 10.72 GTGGAAAAAT AAACAAAA CCAGCACTAA iYBR162C 477 11.74 GCCAACGCGA AAAGAAAA GAAAAAGCGA iYBR162C 482 11.74 CGCGAAAAGA AAAGAAAA AGCGAGGCGC iYCR063W 128 10.72 GAACGCGAAA AAACAAAA CAGACGCGAG iYCR063W 481 9.68 TATTTCGAAG CAAAAAAA AAAAAAATCA iYCR063W 482 12.47 ATTTCGAAGC AAAAAAAA AAAAAATCAA iYCR063W 483 12.47 TTTCGAAGCA AAAAAAAA AAAAATCAAC iYCR063W 484 12.47 TTCGAAGCAA AAAAAAAA AAAATCAACA iYCR063W 485 12.47 TCGAAGCAAA AAAAAAAA AAATCAACAA iYCR063W 486 12.47 CGAAGCAAAA AAAAAAAA AATCAACAAA iYCR063W 487 12.47 GAAGCAAAAA AAAAAAAA ATCAACAAAA iYCR063W 488 12.47 AAGCAAAAAA AAAAAAAA TCAACAAAAA iYCR063W 498 9.66 AAAAAAAATC AACAAAAA TTCCAACTTT iYDL004W 210 10.72 AAAAACAAGA AAACAAAA GAGAAAACAT iYDL004W 432 9.71 CTAAAAAAAT GAAAAAAA CGTTCATGCC iYDL004W 707 11.74 AAGAGTTTGT AAAGAAAA AGATCCCTGT iYDL004W 1107 9.66 GAAAATCCAT AACAAAAA AGGACTGGTC iYDL004W 1125 11.74 AGGACTGGTC AAAGAAAA GACAACTCAA iYDL055C-0 174 11.74 CAAGATAGAC AAAGAAAA AAAAAATACA iYDL055C-0 176 9.82 AGATAGACAA AGAAAAAA AAAATACAGT iYDL055C-0 177 9.71 GATAGACAAA GAAAAAAA AAATACAGTT iYDL055C-0 178 12.47 ATAGACAAAG AAAAAAAA AATACAGTTT iYDL055C-0 179 12.47 TAGACAAAGA AAAAAAAA ATACAGTTTT iYDL055C-0 180 12.47 AGACAAAGAA AAAAAAAA TACAGTTTTG iYDL055C-0 202 11.74 GTTTTGGAGA AAAGAAAA CAAGACTATG iYDL055C-0 286 9.71 ACGAGGCAAG GAAAAAAA GAAAACAAAG iYDL055C-0 291 11.74 GCAAGGAAAA AAAGAAAA CAAAGCGAGA iYDL055C-0 418 11.74 CGACAAAAAC AAAGAAAA AAAAGTTTTT iYDL055C-0 420 9.82 ACAAAAACAA AGAAAAAA AAGTTTTTCA iYDL055C-0 421 9.71 CAAAAACAAA GAAAAAAA AGTTTTTCAG iYDL055C-0 422 12.47 AAAAACAAAG AAAAAAAA GTTTTTCAGA iYDL128W 174 9.71 AATTTTATCT GAAAAAAA GTTTTCAAAA iYDR076W 75 11.74 CAACAACTAC AAAGAAAA GTTAAGGGTA iYDR441C 258 9.71 GAAAAAACTG GAAAAAAA TAAAAAGAAA iYDR441C 269 11.74 AAAAAAATAA AAAGAAAA AATTGAAAAA iYDR441C 271 9.82 AAAAATAAAA AGAAAAAA TTGAAAAAGA iYDR500C 178 9.82 GAGTGCTTGA AGAAAAAA AAAACTGATA iYDR500C 179 9.71 AGTGCTTGAA GAAAAAAA AAACTGATAT iYDR500C 180 12.47 GTGCTTGAAG AAAAAAAA AACTGATATA iYDR500C 181 12.47 TGCTTGAAGA AAAAAAAA ACTGATATAG iYDR500C 182 12.47 GCTTGAAGAA AAAAAAAA CTGATATAGA iYDR507C 140 10.72 AGAGAAAGCA AAACAAAA TAGAAAAGAA iYDR507C 152 11.74 ACAAAATAGA AAAGAAAA TCAAGAAGAA iYER069W 499 11.74 TCAAATTTAA AAAGAAAA AACGCGTAAA iYER069W 501 9.82 AAATTTAAAA AGAAAAAA CGCGTAAACA iYER111C 268 9.71 TTATTATCTC GAAAAAAA AAAAAGCTTC iYER111C 269 12.47 TATTATCTCG AAAAAAAA AAAAGCTTCC iYER111C 270 12.47 ATTATCTCGA AAAAAAAA AAAGCTTCCA iYER111C 271 12.47 TTATCTCGAA AAAAAAAA AAGCTTCCAG iYER111C 272 12.47 TATCTCGAAA AAAAAAAA AGCTTCCAGT iYER111C 273 12.47 ATCTCGAAAA AAAAAAAA GCTTCCAGTT iYGL179C-0 230 9.71 TATGCTCAAC GAAAAAAA TAGCCAAGAT iYGL179C-0 455 9.68 ATCCGAAGCG CAAAAAAA ATAAAGGTGC iYGL179C-0 456 12.47 TCCGAAGCGC AAAAAAAA TAAAGGTGCT iYGL179C-0 554 10.72 ATTGCATAAG AAACAAAA TGTACGGCCC iYGL179C-1 9 9.68 CGAAATGC CAAAAAAA CGCGAAACGC iYGL179C-1 1030 9.68 GCTAAAAAAC CAAAAAAA AAAAAAAAAA iYGL179C-1 1031 12.47 CTAAAAAACC AAAAAAAA AAAAAAAAAA iYGL179C-1 1032 12.47 TAAAAAACCA AAAAAAAA AAAAAAAAAA iYGL179C-1 1033 12.47 AAAAAACCAA AAAAAAAA AAAAAAAAAC iYGL179C-1 1034 12.47 AAAAACCAAA AAAAAAAA AAAAAAAACC iYGL179C-1 1035 12.47 AAAACCAAAA AAAAAAAA AAAAAAACCT iYGL179C-1 1036 12.47 AAACCAAAAA AAAAAAAA AAAAAACCTC iYGL179C-1 1037 12.47 AACCAAAAAA AAAAAAAA AAAAACCTCC iYGL179C-1 1038 12.47 ACCAAAAAAA AAAAAAAA AAAACCTCCT iYGL179C-1 1039 12.47 CCAAAAAAAA AAAAAAAA AAACCTCCTC iYGL179C-1 1040 12.47 CAAAAAAAAA AAAAAAAA AACCTCCTCA iYGL179C-1 1041 12.47 AAAAAAAAAA AAAAAAAA ACCTCCTCAA iYGL179C-1 1042 12.47 AAAAAAAAAA AAAAAAAA CCTCCTCAAC iYGR189C 391 9.68 AAATAGTCGC CAAAAAAA TCGATGGGCT iYGR189C 493 9.71 CTCTTTTTCC GAAAAAAA AAAAATTAAA iYGR189C 494 12.47 TCTTTTTCCG AAAAAAAA AAAATTAAAT iYGR189C 495 12.47 CTTTTTCCGA AAAAAAAA AAATTAAATA iYGR189C 496 12.47 TTTTTCCGAA AAAAAAAA AATTAAATAA iYGR189C 497 12.47 TTTTCCGAAA AAAAAAAA ATTAAATAAT iYGR189C 498 12.47 TTTCCGAAAA AAAAAAAA TTAAATAATA iYGR279C 241 9.82 GGGAGAAAAC AGAAAAAA AAAAACAAAA iYGR279C 242 9.71 GGAGAAAACA GAAAAAAA AAAACAAAAA iYGR279C 243 12.47 GAGAAAACAG AAAAAAAA AAACAAAAAC iYGR279C 244 12.47 AGAAAACAGA AAAAAAAA AACAAAAACA iYGR279C 245 12.47 GAAAACAGAA AAAAAAAA ACAAAAACAA iYGR279C 246 12.47 AAAACAGAAA AAAAAAAA CAAAAACAAC iYGR279C 251 10.72 AGAAAAAAAA AAACAAAA ACAACGGTGC iYGR279C 252 9.66 GAAAAAAAAA AACAAAAA CAACGGTGCC iYGR279C 303 9.71 GAAAATTTCT GAAAAAAA TGCGCGTGAA iYHR061C 83 12.47 AGTCTTTCTT AAAAAAAA GTAGTGATAG iYIL124W 1002 9.82 GTAAAACAAG AGAAAAAA AAACACTTTA iYIL124W 1003 9.71 TAAAACAAGA GAAAAAAA AACACTTTAC iYIL124W 1004 12.47 AAAACAAGAG AAAAAAAA ACACTTTACT iYIL124W 1005 12.47 AAACAAGAGA AAAAAAAA CACTTTACTA iYIL142W 102 9.71 TCAAAGACGC GAAAAAAA AAGAACAACG iYIL142W 103 12.47 CAAAGACGCG AAAAAAAA AGAACAACGC iYIL142W 104 12.47 AAAGACGCGA AAAAAAAA GAACAACGCG iYJL079C 527 9.71 GCTCGTTTAG GAAAAAAA ATGCATAGTT iYJL079C 528 12.47 CTCGTTTAGG AAAAAAAA TGCATAGTTG iYJL158C 302 11.74 AAAAGGGGAA AAAGAAAA GCTGGAAGGG iYJL158C 672 9.71 AACGCCAAAC GAAAAAAA ATATATAGTG iYJL158C 673 12.47 ACGCCAAACG AAAAAAAA TATATAGTGC iYJL158C 832 9.71 GTGGAGAAAC GAAAAAAA AAAAAGGAAA iYJL158C 833 12.47 TGGAGAAACG AAAAAAAA AAAAGGAAAA iYJL158C 834 12.47 GGAGAAACGA AAAAAAAA AAAGGAAAAG iYJL158C 835 12.47 GAGAAACGAA AAAAAAAA AAGGAAAAGC iYJL158C 836 12.47 AGAAACGAAA AAAAAAAA AGGAAAAGCA iYJL158C 837 12.47 GAAACGAAAA AAAAAAAA GGAAAAGCAA iYJL187C 281 11.74 GTGATGGTTA AAAGAAAA ATGAAAAAAT iYJL187C 329 12.47 CCGGAGGAAT AAAAAAAA GAAACATACA iYJL187C 739 9.71 CATCGGCGGG GAAAAAAA AGTGTAACAA iYJL187C 740 12.47 ATCGGCGGGG AAAAAAAA GTGTAACAAC iYJR053W 200 10.72 TTAACATTTC AAACAAAA GAGCCCTTGA iYKL008C 232 9.82 TAAATAAATA AGAAAAAA AAAAAGCAAG iYKL008C 233 9.71 AAATAAATAA GAAAAAAA AAAAGCAAGT iYKL008C 234 12.47 AATAAATAAG AAAAAAAA AAAGCAAGTA iYKL008C 235 12.47 ATAAATAAGA AAAAAAAA AAGCAAGTAA iYKL008C 236 12.47 TAAATAAGAA AAAAAAAA AGCAAGTAAA iYKL008C 237 12.47 AAATAAGAAA AAAAAAAA GCAAGTAAAT iYKL008C 256 10.72 CAAGTAAATA AAACAAAA CGGGATGCAA iYKL008C 393 9.82 CACCGATATG AGAAAAAA GAGTGAAAAA iYKL008C 405 9.71 AAAAAAGAGT GAAAAAAA AAAAATGACG iYKL008C 406 12.47 AAAAAGAGTG AAAAAAAA AAAATGACGA iYKL008C 407 12.47 AAAAGAGTGA AAAAAAAA AAATGACGAA iYKL008C 408 12.47 AAAGAGTGAA AAAAAAAA AATGACGAAA iYKL008C 409 12.47 AAGAGTGAAA AAAAAAAA ATGACGAAAA iYKL008C 410 12.47 AGAGTGAAAA AAAAAAAA TGACGAAAAT iYKL097C 163 12.47 GTAACGTTCT AAAAAAAA AACAACGAAA iYKL097C 164 12.47 TAACGTTCTA AAAAAAAA ACAACGAAAA iYKL097C 165 12.47 AACGTTCTAA AAAAAAAA CAACGAAAAA iYKL097C 332 9.82 CACACTAACA AGAAAAAA AA iYKL097C 333 9.71 ACACTAACAA GAAAAAAA A iYKL097C 334 12.47 CACTAACAAG AAAAAAAA iYKR011C 408 11.74 CACTCAATAG AAAGAAAA CAGAAAGTGG iYKR011C 950 11.74 AGGTGTAAAA AAAGAAAA CGCATCACTG iYKR041W 239 11.74 TCGTGCGGAA AAAGAAAA AAGCAGACAA iYKR041W 241 9.82 GTGCGGAAAA AGAAAAAA GCAGACAAAA iYKR041W 256 10.72 AAAGCAGACA AAACAAAA TTTTTCCTTT iYLR299W 155 10.72 TACGCCCTTA AAACAAAA CAAAAAATCC iYLR299W 160 10.72 CCTTAAAACA AAACAAAA AATCCAGATC iYLR299W 161 9.66 CTTAAAACAA AACAAAAA ATCCAGATCA iYLR330W 310 9.71 ACGGAAAACG GAAAAAAA TCTAAAAAAA iYLR330W 398 9.68 GTGGTCTGTG CAAAAAAA TGGCAATTTT iYLR341W 442 11.74 TATTAACGAA AAAGAAAA GAAAGACCAT iYLR341W 1122 9.68 TACGTTCGCT CAAAAAAA TTAAAATAAG iYMR016C-0 269 9.66 TTCAAAAACT AACAAAAA GAAGTGTTAA iYMR016C-0 587 11.74 GCAACAAAAG AAAGAAAA ACCGGACAAC iYMR016C-1 768 12.47 TGTGTCACAT AAAAAAAA ACTCCCGCCA iYMR016C-1 769 12.47 GTGTCACATA AAAAAAAA CTCCCGCCAA iYMR198W 691 12.47 CTCGAAAATT AAAAAAAA AGATACTGCA iYMR198W 692 12.47 TCGAAAATTA AAAAAAAA GATACTGCAG iYMR305C 49 9.71 TTGACAATTT GAAAAAAA GAACAGTAAT iYMR305C 572 11.74 GCTTAGATAA AAAGAAAA TCTAGATGTC iYMR305C 888 11.74 CATATTGGGA AAAGAAAA ACATACTGAG iYMR306C-A 146 11.74 GAGATGGGAA AAAGAAAA GTCGGGAAAA iYMR306C-A 398 10.72 AAGTCTGATA AAACAAAA ACAACAAACA iYMR306C-A 399 9.66 AGTCTGATAA AACAAAAA CAACAAACAC iYNL231C 76 10.72 GAACAGTTAG AAACAAAA TAAGGATTGA iYNL231C 313 9.71 CGGGTGGAAT GAAAAAAA TCATAAAAAT iYNL283C 411 10.72 TTATAAAACG AAACAAAA AACCTGCTGT iYNL283C 412 9.66 TATAAAACGA AACAAAAA ACCTGCTGTA iYNL283C 600 9.71 ACCGCACCGC GAAAAAAA AAAAAAACAG iYNL283C 601 12.47 CCGCACCGCG AAAAAAAA AAAAAACAGG iYNL283C 602 12.47 CGCACCGCGA AAAAAAAA AAAAACAGGA iYNL283C 603 12.47 GCACCGCGAA AAAAAAAA AAAACAGGAA iYNL283C 604 12.47 CACCGCGAAA AAAAAAAA AAACAGGAAA iYNL283C 605 12.47 ACCGCGAAAA AAAAAAAA AACAGGAAAA iYNL283C 606 12.47 CCGCGAAAAA AAAAAAAA ACAGGAAAAA iYNL283C 607 12.47 CGCGAAAAAA AAAAAAAA CAGGAAAAAA iYNL283C 730 9.66 CTTTCAGTAG AACAAAAA TCGGGGGAAA iYNL290W 87 12.47 AGAACGAAAT AAAAAAAA TAAAAGAAAT iYNL290W 604 9.66 CATTGTCAAG AACAAAAA CGATAACAAA iYNL290W 616 9.66 CAAAAACGAT AACAAAAA CAATCAATTA iYNL301C 380 11.74 AATGTAAAAT AAAGAAAA TCTATCGTTC iYNL301C 678 12.47 CTTATTCCTT AAAAAAAA TATTGGACAT iYNR008W 102 10.72 AATAAACAGA AAACAAAA ACAAAAACAA iYNR008W 103 9.66 ATAAACAGAA AACAAAAA CAAAAACAAA iYNR008W 108 10.72 CAGAAAACAA AAACAAAA ACAAAAAAAG iYNR008W 109 9.66 AGAAAACAAA AACAAAAA CAAAAAAAGG iYNR008W 114 10.72 ACAAAAACAA AAACAAAA AAAGGCGAAA iYNR008W 115 9.66 CAAAAACAAA AACAAAAA AAGGCGAAAA iYNR008W 117 9.68 AAAACAAAAA CAAAAAAA GGCGAAAAAA iYOR246C 241 9.68 CAGGGTTTTC CAAAAAAA AACAGTGATT iYOR246C 242 12.47 AGGGTTTTCC AAAAAAAA ACAGTGATTA iYOR246C 243 12.47 GGGTTTTCCA AAAAAAAA CAGTGATTAA iYOR248W 184 9.82 GTTTGTTAAT AGAAAAAA AAAAATAAAA iYOR248W 185 9.71 TTTGTTAATA GAAAAAAA AAAATAAAAT iYOR248W 186 12.47 TTGTTAATAG AAAAAAAA AAATAAAATA iYOR248W 187 12.47 TGTTAATAGA AAAAAAAA AATAAAATAA iYOR248W 188 12.47 GTTAATAGAA AAAAAAAA ATAAAATAAA iYOR248W 189 12.47 TTAATAGAAA AAAAAAAA TAAAATAAAA iYOR314W 79 9.66 TTTTAAGTAG AACAAAAA AATCTAGGAC iYOR314W 81 9.68 TTAAGTAGAA CAAAAAAA TCTAGGACAG iYOR314W 163 9.66 CCAGAAAGAC AACAAAAA AGTGTTTTCT iYOR314W 768 9.68 CGGGAATATG CAAAAAAA AAAAGAAAAC iYOR314W 769 12.47 GGGAATATGC AAAAAAAA AAAGAAAACA iYOR314W 770 12.47 GGAATATGCA AAAAAAAA AAGAAAACAA iYOR314W 771 12.47 GAATATGCAA AAAAAAAA AGAAAACAAT iYOR314W 772 12.47 AATATGCAAA AAAAAAAA GAAAACAATC iYOR314W 777 11.74 GCAAAAAAAA AAAGAAAA CAATCCCGCT iYOR314W 849 10.72 TCAGTCTTAA AAACAAAA CAGTATGACA iYOR314W 1367 9.82 TATAAAATTA AGAAAAAA AAAATTTCAA iYOR314W 1368 9.71 ATAAAATTAA GAAAAAAA AAATTTCAAA iYOR314W 1369 12.47 TAAAATTAAG AAAAAAAA AATTTCAAAA iYOR314W 1370 12.47 AAAATTAAGA AAAAAAAA ATTTCAAAAA iYOR314W 1371 12.47 AAATTAAGAA AAAAAAAA TTTCAAAAAC iYOR342C 212 9.71 GAAAACTAAT GAAAAAAA TTTTTCAATT iYOR377W-1 225 9.82 GTGAGCGCCT AGAAAAAA AGCTGAAAAG iYOR377W-1 226 9.71 TGAGCGCCTA GAAAAAAA GCTGAAAAGC iYOR377W-1 796 11.74 CTCTACCTGA AAAGAAAA CAAATATTGT iYPL057C 130 11.74 ACAACAGGTT AAAGAAAA CAAAACATGC iYPL057C 135 10.72 AGGTTAAAGA AAACAAAA CATGCGAAGC iYPL057C 198 11.74 CTATATTAGA AAAGAAAA AGCAGAAAAC iYPL057C 303 9.71 AACAAGAGGG GAAAAAAA TGTGGAAATT iYPL057C 336 9.66 TGGACGTGAG AACAAAAA AGCACCGCTG iYPL163C 444 12.47 TGTTCCCTTT AAAAAAAA TCAATTAAGC iYPL256C 35 11.74 TGAATGGAAA AAAGAAAA GATTTTCTTT iYPRWsigma2-1 506 9.71 ATTTAGAAAG GAAAAAAA ATCAAAATAT iYPRWsigma2-1 507 12.47 TTTAGAAAGG AAAAAAAA TCAAAATATA --------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 53238 bayes= 9.64758 1.496 -1.285 -1.259 -3.844 1.598 -3.097 -1.047 -4.739 1.589 -1.217 -2.680 -3.647 1.022 -0.726 0.301 -4.536 1.643 -3.246 -1.496 -4.135 1.734 -4.222 -2.506 -4.648 1.667 -4.173 -1.508 -4.459 1.716 -4.911 -2.205 -3.944 letter-probability matrix: alength= 4 w= 8 n= 53238 0.794642 0.091116 0.095632 0.018610 0.853259 0.025940 0.110791 0.010010 0.847456 0.095487 0.035718 0.021340 0.572275 0.134271 0.281931 0.011524 0.880240 0.023399 0.081149 0.015212 0.937159 0.011895 0.040285 0.010662 0.895080 0.012308 0.080457 0.012155 0.925620 0.007380 0.049630 0.017369 Time 809.37 secs. ******************************************************************************** MOTIF 9 width = 8 sites = 46.2 ******************************************************************************** Simplified A 22239aa9 motif letter- C 7153:::: probability G 16341::: matrix T :::::::1 bits 2.2 2.0 1.7 1.5 ** Information 1.3 *** content 1.1 **** (7.9 bits) 0.9 **** 0.7 ** **** 0.4 *** **** 0.2 ******** 0.0 -------- Multilevel CGCGAAAA consensus AGC sequence AA -------------------------------------------------------------------------------- Motif 9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 9 width=8 seqs=77 iYDL128W ( 648) CGCGAAAA 0.604505 iYDR309C ( 513) CGCCAAAA 0.783198 iYDR525W ( 95) CGCCAAAA 0.74119 iYGR189C ( 388) CGCCAAAA 0.502994 iYKR011C ( 278) CGGCAAAA 0.519092 iYMR306C-A ( 156) CGGGAAAA 0.636251 iYOR246C ( 351) CGCCAAAA 0.72522 iYOR372C ( 195) CGCCAAAA 0.66185 iYPL163C ( 270) CGGGAAAA 0.674065 iYPRWsigma2-1 ( 185) CGCCAAAA 0.567457 // --------------------------------------------------------------------- Possible examples of motif 9 in the training set --------------------------------------------------------------------- Sequence name Start Score Site ------------- ----- ----- -------- iYBR077C 219 11.09 TACCGTAAAC CGCAAAAA AAAAAGGATG iYBR162C 150 10.45 AGTCTTCTTG CGAGAAAA GAAATAATTA iYBR162C 472 12.00 AAGTCGCCAA CGCGAAAA GAAAAGAAAA iYCR063W 121 12.00 GTCATTGGAA CGCGAAAA AACAAAACAG iYCR063W 153 12.00 GAGAACGCGA CGCGAAAA AATATATTTT iYDL004W 81 11.60 CGCTTGAAAG CGCCAAAA TTCATTGTTT iYDL004W 887 10.45 AGGGACGCGT CGAGAAAA TCGCGTCTTT iYDL128W 648 12.00 CTTTTGATGA CGCGAAAA GTAGACTTCG iYDR221W 110 12.00 TCGGCCAAAA CGCGAAAA GACGATAAAT iYDR221W 177 12.00 GTTGGAATAA CGCGAAAA GAAGGGTACG iYDR309C 513 11.60 GCTTGCTGAA CGCCAAAA TTATAAAAAC iYDR525W 95 11.60 ATGAATGGGG CGCCAAAA CAGTCGCGGG iYEL041W 386 12.00 TAGGAAGAAG CGCGAAAA TTCTTGAAAA iYGL179C-0 453 11.09 TTATCCGAAG CGCAAAAA AAATAAAGGT iYGL179C-1 48 11.09 GTCAGTACCG CGCAAAAA ATACAAAAAT iYGR189C 388 11.60 TCGAAATAGT CGCCAAAA AAATCGATGG iYGR279C 428 12.00 CAGGGTGTCG CGCGAAAA GCGGTGCCTA iYIL142W 68 11.09 AGAAACAGAA CGCAAAAA TTATCCACTA iYIL142W 99 12.00 AATTCAAAGA CGCGAAAA AAAAAGAACA iYKL102C 399 12.00 TGCTACTAAT CGCGAAAA GAGATAAATA iYKR011C 278 10.59 AAATTCACGG CGGCAAAA GGTCTGTAAC iYLR084C 214 12.00 TTTTTTGTAT CGCGAAAA AATGGGAAGA iYMR016C-0 608 10.98 GGACAACATG CGGGAAAA ATGCAAACTG iYMR016C-0 664 10.98 ACATCAACGG CGGGAAAA GATCCTTCCG iYMR016C-1 744 10.59 TATTTACCAC CGGCAAAA GGCCATTGTG iYMR306C-A 156 10.98 AAAGAAAAGT CGGGAAAA TAATGAGAAA iYNL231C 364 12.00 TGACGCGCAA CGCGAAAA TCGCTTATAA iYNL283C 597 12.00 AACACCGCAC CGCGAAAA AAAAAAAAAA iYNL301C 717 11.60 TTAACAACGA CGCCAAAA ACTTGTCTAT iYNL301C 783 12.00 AAAGAAGTGA CGCGAAAA TGACGGTATA iYNL301C 817 11.60 CATTAGCAGT CGCCAAAA GGTGAAGATC iYOL007C 390 12.00 ACGCAGAAAA CGCGAAAA CCGCCAAAAT iYOL007C 399 11.60 ACGCGAAAAC CGCCAAAA TTTCGAAGGG iYOR246C 351 11.60 CAACACGAAA CGCCAAAA TTCTTGGCCC iYOR342C 484 12.00 CCGTAGAAAA CGCGAAAA GCCGCTGAAA iYOR372C 195 11.60 TTACGCCAAA CGCCAAAA GGCTTATGCG iYPL163C 270 10.98 TCCAATGCGG CGGGAAAA TCAAAAAACG iYPRWsigma2-1 185 11.60 CGGAAATAGC CGCCAAAA GACAGATTTT --------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 53238 bayes= 10.1701 -0.707 1.598 -0.772 -3.662 -0.464 -0.777 1.496 -3.709 -0.370 1.182 0.166 -3.644 -0.060 0.450 0.849 -4.234 1.696 -4.214 -1.888 -4.356 1.775 -4.580 -3.691 -4.942 1.769 -3.836 -4.292 -4.442 1.635 -3.776 -4.076 -1.490 letter-probability matrix: alength= 4 w= 8 n= 53238 0.172654 0.672231 0.134000 0.021115 0.204327 0.129546 0.645689 0.020437 0.218057 0.503770 0.256794 0.021380 0.270247 0.303362 0.412182 0.014209 0.913156 0.011966 0.061825 0.013052 0.964300 0.009284 0.017718 0.008698 0.960465 0.015552 0.011687 0.012296 0.875052 0.016209 0.013572 0.095167 Time 910.55 secs. ******************************************************************************** MOTIF 10 width = 8 sites = 28.8 ******************************************************************************** Simplified A :::::::: motif letter- C 1:111111 probability G :::::::: matrix T 89999998 bits 2.2 2.0 1.7 1.5 Information 1.3 * content 1.1 ******* (9.5 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTTTTT consensus sequence -------------------------------------------------------------------------------- Motif 10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 10 width=8 seqs=77 // --------------------------------------------------------------------- Possible examples of motif 10 in the training set --------------------------------------------------------------------- Sequence name Start Score Site ------------- ----- ----- -------- iYBR077C 44 10.97 TGATAACTGC CTTTTTTT TTTTTCTTCT iYBR077C 45 13.56 GATAACTGCC TTTTTTTT TTTTCTTCTT iYBR077C 46 13.56 ATAACTGCCT TTTTTTTT TTTCTTCTTA iYBR077C 47 13.56 TAACTGCCTT TTTTTTTT TTCTTCTTAT iYBR077C 48 13.56 AACTGCCTTT TTTTTTTT TCTTCTTATC iYBR077C 49 13.56 ACTGCCTTTT TTTTTTTT CTTCTTATCT iYBR162C 543 10.97 CTTGACGTGG CTTTTTTT CTTGTCGCCA iYCR063W 175 13.56 TATTTTTCCG TTTTTTTT TTTTTTCGGA iYCR063W 176 13.56 ATTTTTCCGT TTTTTTTT TTTTTCGGAA iYCR063W 177 13.56 TTTTTCCGTT TTTTTTTT TTTTCGGAAC iYCR063W 178 13.56 TTTTCCGTTT TTTTTTTT TTTCGGAACA iYCR063W 179 13.56 TTTCCGTTTT TTTTTTTT TTCGGAACAA iYCR063W 180 13.56 TTCCGTTTTT TTTTTTTT TCGGAACAAA iYCR063W 181 13.56 TCCGTTTTTT TTTTTTTT CGGAACAAAG iYDL055C-0 521 13.56 TCTTTTGGCG TTTTTTTT TTCTGTTTTC iYDL055C-0 522 13.56 CTTTTGGCGT TTTTTTTT TCTGTTTTCG iYDL055C-0 523 13.56 TTTTGGCGTT TTTTTTTT CTGTTTTCGC iYDL128W 34 10.97 TCACCATTCT CTTTTTTT TTATATTTTA iYDL128W 35 13.56 CACCATTCTC TTTTTTTT TATATTTTAT iYDL128W 36 13.56 ACCATTCTCT TTTTTTTT ATATTTTATC iYDR221W 291 13.56 GCGGCTTTTA TTTTTTTT TTTTTTTTTT iYDR221W 292 13.56 CGGCTTTTAT TTTTTTTT TTTTTTTTTT iYDR221W 293 13.56 GGCTTTTATT TTTTTTTT TTTTTTTTTC iYDR221W 294 13.56 GCTTTTATTT TTTTTTTT TTTTTTTTCT iYDR221W 295 13.56 CTTTTATTTT TTTTTTTT TTTTTTTCTC iYDR221W 296 13.56 TTTTATTTTT TTTTTTTT TTTTTTCTCA iYDR221W 297 13.56 TTTATTTTTT TTTTTTTT TTTTTCTCAT iYDR221W 298 13.56 TTATTTTTTT TTTTTTTT TTTTCTCATC iYDR221W 299 13.56 TATTTTTTTT TTTTTTTT TTTCTCATCT iYDR221W 300 13.56 ATTTTTTTTT TTTTTTTT TTCTCATCTT iYDR221W 301 13.56 TTTTTTTTTT TTTTTTTT TCTCATCTTT iYDR221W 302 13.56 TTTTTTTTTT TTTTTTTT CTCATCTTTG iYDR309C 861 13.56 TTATTTTGTG TTTTTTTT ATTTTTTTTT iYDR309C 870 13.56 GTTTTTTTTA TTTTTTTT TATTTTTCAT iYDR309C 871 13.56 TTTTTTTTAT TTTTTTTT ATTTTTCATT iYDR441C 48 10.97 CACGCACTCT CTTTTTTT AAGGAGCGAA iYDR451C 594 13.56 CAGATCAATA TTTTTTTT GGTTGTTGGG iYDR500C 278 13.56 AACGCGATAA TTTTTTTT TCGCGTTTGT iYDR500C 279 13.56 ACGCGATAAT TTTTTTTT CGCGTTTGTT iYDR500C 408 13.56 TATAGAAGCG TTTTTTTT TTTGGTATAC iYDR500C 409 13.56 ATAGAAGCGT TTTTTTTT TTGGTATACT iYDR500C 410 13.56 TAGAAGCGTT TTTTTTTT TGGTATACTA iYDR500C 411 13.56 AGAAGCGTTT TTTTTTTT GGTATACTAT iYDR507C 634 13.56 TTTCTTCAAG TTTTTTTT TTTTTTTTTG iYDR507C 635 13.56 TTCTTCAAGT TTTTTTTT TTTTTTTTGA iYDR507C 636 13.56 TCTTCAAGTT TTTTTTTT TTTTTTTGAA iYDR507C 637 13.56 CTTCAAGTTT TTTTTTTT TTTTTTGAAT iYDR507C 638 13.56 TTCAAGTTTT TTTTTTTT TTTTTGAATC iYDR507C 639 13.56 TCAAGTTTTT TTTTTTTT TTTTGAATCG iYDR507C 640 13.56 CAAGTTTTTT TTTTTTTT TTTGAATCGT iYDR507C 641 13.56 AAGTTTTTTT TTTTTTTT TTGAATCGTG iYDR507C 642 13.56 AGTTTTTTTT TTTTTTTT TGAATCGTGA iYDR507C 643 13.56 GTTTTTTTTT TTTTTTTT GAATCGTGAT iYDR525W-A 70 10.97 TTTTGCTACC CTTTTTTT TTCATTTCTT iYDR525W-A 71 13.56 TTTGCTACCC TTTTTTTT TCATTTCTTT iYDR525W-A 72 13.56 TTGCTACCCT TTTTTTTT CATTTCTTTC iYDR525W-A 89 10.97 TCATTTCTTT CTTTTTTT TCTATTTTAT iYDR525W-A 90 13.56 CATTTCTTTC TTTTTTTT CTATTTTATT iYER069W 557 10.97 TTAATTGCTT CTTTTTTT GAAATTCTAA iYER111C 134 10.97 AATAATGTAC CTTTTTTT CAAAGGGTAA iYER111C 252 10.97 TAAAGAGTTT CTTTTTTT ATTATCTCGA iYER111C 411 10.97 CCTTGTTCCT CTTTTTTT TTTGTTAGGT iYER111C 412 13.56 CTTGTTCCTC TTTTTTTT TTGTTAGGTT iYER111C 413 13.56 TTGTTCCTCT TTTTTTTT TGTTAGGTTA iYER111C 414 13.56 TGTTCCTCTT TTTTTTTT GTTAGGTTAA iYER111C 935 10.97 TGGGTAGCAT CTTTTTTT TAATAGATAG iYER111C 936 13.56 GGGTAGCATC TTTTTTTT AATAGATAGT iYGL179C-1 462 13.56 AGATTCCTTA TTTTTTTT CTTCTTTCGC iYGL179C-1 578 10.97 TGTGATCATT CTTTTTTT CTCTCTTGCC iYGR040W 170 13.56 CGGCAACAAG TTTTTTTT TTTCGCCAGC iYGR040W 171 13.56 GGCAACAAGT TTTTTTTT TTCGCCAGCA iYGR040W 172 13.56 GCAACAAGTT TTTTTTTT TCGCCAGCAG iYGR040W 173 13.56 CAACAAGTTT TTTTTTTT CGCCAGCAGA iYGR040W 903 13.56 TAACACCTTA TTTTTTTT TTCGAAGACA iYGR040W 904 13.56 AACACCTTAT TTTTTTTT TCGAAGACAG iYGR040W 905 13.56 ACACCTTATT TTTTTTTT CGAAGACAGC iYGR040W 946 10.97 CGTTCACTAC CTTTTTTT TTACAACAAT iYGR040W 947 13.56 GTTCACTACC TTTTTTTT TACAACAATT iYGR040W 948 13.56 TTCACTACCT TTTTTTTT ACAACAATTT iYGR152C 171 10.97 CGCAATGGTT CTTTTTTT CGAGATCGAG iYGR279C 829 13.56 CTGGCACACA TTTTTTTT TTTCATTTTT iYGR279C 830 13.56 TGGCACACAT TTTTTTTT TTCATTTTTA iYGR279C 831 13.56 GGCACACATT TTTTTTTT TCATTTTTAT iYGR279C 832 13.56 GCACACATTT TTTTTTTT CATTTTTATT iYHR061C 258 13.56 AATTTCTTTG TTTTTTTT TTCCTTTATT iYHR061C 259 13.56 ATTTCTTTGT TTTTTTTT TCCTTTATTG iYHR061C 260 13.56 TTTCTTTGTT TTTTTTTT CCTTTATTGT iYIL124W 243 13.56 TGCTTTGTTG TTTTTTTT TTTTCAAAAT iYIL124W 244 13.56 GCTTTGTTGT TTTTTTTT TTTCAAAATT iYIL124W 245 13.56 CTTTGTTGTT TTTTTTTT TTCAAAATTG iYIL124W 246 13.56 TTTGTTGTTT TTTTTTTT TCAAAATTGC iYIL124W 247 13.56 TTGTTGTTTT TTTTTTTT CAAAATTGCC iYIL124W 817 10.97 CCGGACATGC CTTTTTTT GGCGTTTCGC iYJL187C 711 13.56 TTCTTGCGGA TTTTTTTT TTCACTTTCT iYJL187C 712 13.56 TCTTGCGGAT TTTTTTTT TCACTTTCTC iYJL187C 713 13.56 CTTGCGGATT TTTTTTTT CACTTTCTCA iYKL008C 530 13.56 AAGCCCAGCA TTTTTTTT TTCGCGTCGC iYKL008C 531 13.56 AGCCCAGCAT TTTTTTTT TCGCGTCGCG iYKL008C 532 13.56 GCCCAGCATT TTTTTTTT CGCGTCGCGT iYKL098W 569 10.97 TGCTGCTCGT CTTTTTTT GACGACCCTT iYKL103C 3 10.97 TT CTTTTTTT CTTAATTTTG iYKL103C 275 13.56 TCCCAGATTA TTTTTTTT TTGAATTAGA iYKL103C 276 13.56 CCCAGATTAT TTTTTTTT TGAATTAGAC iYKL103C 277 13.56 CCAGATTATT TTTTTTTT GAATTAGACA iYKR011C 566 10.97 TTACTGGATT CTTTTTTT TTTTTTTTTT iYKR011C 567 13.56 TACTGGATTC TTTTTTTT TTTTTTTTTT iYKR011C 568 13.56 ACTGGATTCT TTTTTTTT TTTTTTTTTT iYKR011C 569 13.56 CTGGATTCTT TTTTTTTT TTTTTTTTTT iYKR011C 570 13.56 TGGATTCTTT TTTTTTTT TTTTTTTTTT iYKR011C 571 13.56 GGATTCTTTT TTTTTTTT TTTTTTTTTT iYKR011C 572 13.56 GATTCTTTTT TTTTTTTT TTTTTTTTTG iYKR011C 573 13.56 ATTCTTTTTT TTTTTTTT TTTTTTTTGG iYKR011C 574 13.56 TTCTTTTTTT TTTTTTTT TTTTTTTGGG iYKR011C 575 13.56 TCTTTTTTTT TTTTTTTT TTTTTTGGGC iYKR011C 576 13.56 CTTTTTTTTT TTTTTTTT TTTTTGGGCT iYKR011C 577 13.56 TTTTTTTTTT TTTTTTTT TTTTGGGCTA iYKR011C 578 13.56 TTTTTTTTTT TTTTTTTT TTTGGGCTAG iYKR011C 579 13.56 TTTTTTTTTT TTTTTTTT TTGGGCTAGC iYKR011C 580 13.56 TTTTTTTTTT TTTTTTTT TGGGCTAGCT iYKR011C 581 13.56 TTTTTTTTTT TTTTTTTT GGGCTAGCTA iYKR041W 270 10.97 AAAATTTTTC CTTTTTTT CGCCTTTGTT iYLR084C 202 10.97 CCATATATTT CTTTTTTT GTATCGCGAA iYLR341W 497 13.56 ACAAGCGCCA TTTTTTTT TCTGTATCGG iYLR341W 498 13.56 CAAGCGCCAT TTTTTTTT CTGTATCGGG iYLR341W 710 10.97 GGAAGAATTT CTTTTTTT TTTGGCTTCT iYLR341W 711 13.56 GAAGAATTTC TTTTTTTT TTGGCTTCTT iYLR341W 712 13.56 AAGAATTTCT TTTTTTTT TGGCTTCTTC iYLR341W 713 13.56 AGAATTTCTT TTTTTTTT GGCTTCTTCT iYLR341W 813 10.97 CCATTCGTTC CTTTTTTT CGATTTTTTC iYMR016C-0 94 13.56 ATCAAAAAGG TTTTTTTT TTTTATACAA iYMR016C-0 95 13.56 TCAAAAAGGT TTTTTTTT TTTATACAAT iYMR016C-0 96 13.56 CAAAAAGGTT TTTTTTTT TTATACAATT iYMR016C-0 97 13.56 AAAAAGGTTT TTTTTTTT TATACAATTG iYMR016C-0 98 13.56 AAAAGGTTTT TTTTTTTT ATACAATTGT iYMR305C 15 10.97 GGAATGAAGA CTTTTTTT GCGTTAATAC iYNL231C 17 13.56 GCTTTTGTAA TTTTTTTT ATATAAAGTG iYNL279W 281 10.97 TTGCAACATC CTTTTTTT ATAAACTTTG iYNL301C 414 13.56 CGTGGTCCCA TTTTTTTT TACTTTGAAT iYNL301C 415 13.56 GTGGTCCCAT TTTTTTTT ACTTTGAATT iYOL007C 351 10.97 ACGCTAATTA CTTTTTTT TCGCGATCCT iYOL007C 352 13.56 CGCTAATTAC TTTTTTTT CGCGATCCTG iYOL114C 70 13.56 GATTCTGTTG TTTTTTTT TACCGTATAC iYOL114C 71 13.56 ATTCTGTTGT TTTTTTTT ACCGTATACG iYOR246C 735 13.56 ATTTTACAAA TTTTTTTT GCTATTTGAG iYOR246C 790 13.56 CATTCCCTTG TTTTTTTT TTATTGTTTC iYOR246C 791 13.56 ATTCCCTTGT TTTTTTTT TATTGTTTCA iYOR246C 792 13.56 TTCCCTTGTT TTTTTTTT ATTGTTTCAA iYOR314W 975 10.97 CGGGTTTAAA CTTTTTTT TTTCAGCTGC iYOR314W 976 13.56 GGGTTTAAAC TTTTTTTT TTCAGCTGCG iYOR314W 977 13.56 GGTTTAAACT TTTTTTTT TCAGCTGCGA iYOR314W 978 13.56 GTTTAAACTT TTTTTTTT CAGCTGCGAA iYOR342C 319 13.56 ATGGATGAAA TTTTTTTT TTTTTTTCAC iYOR342C 320 13.56 TGGATGAAAT TTTTTTTT TTTTTTCACG iYOR342C 321 13.56 GGATGAAATT TTTTTTTT TTTTTCACGT iYOR342C 322 13.56 GATGAAATTT TTTTTTTT TTTTCACGTC iYOR342C 323 13.56 ATGAAATTTT TTTTTTTT TTTCACGTCA iYOR342C 324 13.56 TGAAATTTTT TTTTTTTT TTCACGTCAG iYOR342C 325 13.56 GAAATTTTTT TTTTTTTT TCACGTCAGA iYOR342C 326 13.56 AAATTTTTTT TTTTTTTT CACGTCAGAA iYOR372C 146 13.56 TGTTTTGTTG TTTTTTTT TTTTGCGTCC iYOR372C 147 13.56 GTTTTGTTGT TTTTTTTT TTTGCGTCCC iYOR372C 148 13.56 TTTTGTTGTT TTTTTTTT TTGCGTCCCG iYOR372C 149 13.56 TTTGTTGTTT TTTTTTTT TGCGTCCCGT iYOR372C 150 13.56 TTGTTGTTTT TTTTTTTT GCGTCCCGTT iYOR377W-1 595 10.97 AATGTTTCAG CTTTTTTT TCAATGGGCC iYOR377W-1 596 13.56 ATGTTTCAGC TTTTTTTT CAATGGGCCA iYPRWsigma2-1 535 13.56 ATAAAATAGA TTTTTTTT AGGTTAATTT iYPRWsigma2-1 716 10.97 TTTATTCTTT CTTTTTTT CTTTCTTTTT TEL15R-1 239 10.97 TGTGTCGTTC CTTTTTTT CATTTTTTGG --------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 53238 bayes= 10.8503 -3.392 -0.948 -3.413 1.646 -3.407 -2.252 -3.706 1.766 -3.033 -1.363 -3.509 1.684 -3.636 -1.568 -3.174 1.714 -3.395 -1.875 -3.261 1.733 -2.861 -1.897 -2.928 1.705 -3.458 -1.277 -3.470 1.689 -3.149 -1.116 -2.409 1.622 letter-probability matrix: alength= 4 w= 8 n= 53238 0.026842 0.115086 0.021482 0.836590 0.026559 0.046598 0.017542 0.909301 0.034431 0.086304 0.020100 0.859165 0.022659 0.074889 0.025354 0.877098 0.026794 0.060544 0.023882 0.888780 0.038787 0.059610 0.030069 0.871535 0.025644 0.091617 0.020658 0.862081 0.031759 0.102417 0.043098 0.822726 Time 1011.80 secs. Stopped because nmotifs = 10 reached. CPU: golden