Supplemental Table 2.  Correlation of gene expression domains in cultured fibroblasts with phenotypes in genetic diseases. For detailed descriptions of mutant alleles and clinical features, please see Online Mendelian Inheritance in Man and references therein.

 

Diseases

Gene/ Protein

        Site of

Overexpression

Clinical features

 

Bethem myopathy

 

COL6A1

 

thigh, abdomen, back

 

Proximal limb-girdle myopathy with joint contractures

 

Conradi-Hunerman syndrome

 

emopamil binding protein

 

arm, abdomen

 

Whorled ichthyosis, chondrodysplasia punctata, rhizomelic shortening of limbs

 

Ehler-Danlos I

 

Collagen type V

COL1A1

 

fetal skin

 

Hyperextensile skin. Loose joints. Fragile skin, easy bruising and heals with “cigarette paper” scars. COL5A1 is also mutated in EDS2 (milder phenotype); COL1A1 also mutated in EDS7.

 

Ehler-Danlos V

 

lysine oxidase

 

cutaneous

 

Similar to type I but less severe. X-linked.

 

Ehler-Danlos VI

 

lysine hydroxylase

 

fetal skin

 

Similar to type I plus kyphoscoliosis or ocular complications such as retinal detachment or keratoconus.

 

Ehler-Danlos X

 

Fibronectin

 

cutaneous

 

Similar to type I plus defect in collagen-induced platelet aggregation.

 

hand-foot-genital syndrome

 

HOXA13

 

toe, foreskin

 

Hypoplastic distal phalanges, thenar eminence. Hypospadias in males, bifid uterus in females and anomalies in urogential system.

 

Marfan's syndrome

 

Fibrillin

 

cutaneous

 

Striae distensae. Increased height and limb length. Loose joints; mitral valve prolapse and risk of thoracic aneurysm.

 

osteogenesis imperfecta

 

COL1A1

 

fetal skin

 

Thin translucent skin, multiple fractures, blue sclera, poor dentition and otosclerosis.

 

pycnodysostosis

 

cathepsin K

 

cutaneous and gum

 

Short stature, brachycephaly, short fingers, osteosclerosis and open cranial sutures.

striate palmo-plantar keratoderma

desmoplakin I

 

toe

 

Thick hyperkeratotic linear papules on palms and soles.

 

 

ulnar-mammary syndrome

 

TBX3

 

foreskin, gum

 

defect in apocrine differentiation. Hypogenitalism, dental abnormalities. Postaxial limb defects

 

X-linked ichthyosis

arylsulfatase C

cutaneous

Diffuse ichthyosis