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Table I: Genes which are more highly expressed in clear cell carcinomas than in other ovarian epithelial cancers. The full listing of these genes is available as Web Supplement Table VI.

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Table II: Genes which are less highly expressed in clear cell carcinomas than in other ovarian epithelial cancers. The full listing of these genes is available as Web Supplement Table VI.

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Table III: Genes which differ between Grade I and II versus grade III serous papillary carcinomas.

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Table IV: Genes which are more highly expressed in ovarian than breast carcinomas, among the 61 genes identified by the PAM method to result in optimal identification of 68 breast and 57 ovarian carcinomas. The complete gene list from is available as Web Supplement Table X.

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Supplement Table V: Specimen number and histological characterization of ovarian specimens.

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Supplement Table VI: List of genes identified by SAM as differentially expressed in clear cell versus other ovarian carcinomas.

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Supplement Table VII: Genes with higher or lower expression in clear cell vs. other ovarian cancers, t-test.

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Supplement Table VIIIA: Genes with higher expression in clear cell vs. other ovarian cancers, rank sum.

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Supplement Table VIIIB: Genes with lower expression in clear cell vs. other ovarian cancers, rank sum.

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Supplement Table IX: Genes which differ in expression between grade III and grade I or II ovarian carcinomas by SAM analysis.

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Supplement Table X: Genes which are more highly expressed in breast compared to ovarian carcinomas, by PAM analysis

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