ORF Name YPD Gene Name Basis for Hand Selection Selection Note FLAG Questionable ORF ? Txn Rate (mRNAs/min) Txn Rate %tile ORF Rap1p IP %tile RNK ORF CNTL %tile RNK Promoter 1 RAP1 Val Rap1p IP %tile RNK Promoter 2 Rap1p IP %tile RNK 3' UTR Rap1p IP %tile RNK Promoter 1 CNTL IP %tile RNK Promoter 2 CNTL IP %tile RNK 3'UTR CNTL IP %tile RNK Promoter 1 Name Promoter 2 Name Adj Left segment Adj Right segment 3'UTR PMTR1 > 0.92? PMTR2 > 0.92? PMTR > 0.92? ORF >.92? 3'UTR >.92 ? My Function My Subcat YPD Desc. MIPS Function SGD Process SGD Function YEL009C GCN4 PMTR PMTR and ORF Selected 59.4 97% 0.927144114 0.903727475 0.935478602 0.85199318 0.203351955 0.758260176 iYEL009C itR(UCU)E iYEL009C itR(UCU)E TRUE FALSE PMTR ORF aa metabolism "Transcription factor of the basic leucine zipper (bZIP) family, regulates general control in response to amino acid or purine starvation" Cellular OrganizationMetabolismAA MetabTXNmRNA TXN "amino acid, purine biosynthesis" transcription factor YEL046C GLY1 ORF "ORF only Selected, Added 11-12-00" Promoter is YEL045C 14.1 90% 0.936902573 0.825984537 0.567505914 zzOverlaps ORF iYEL047C YEL045C iYEL047C FALSE FALSE ORF aa metabolism "Threonine aldolase, required for glycine biosynthesis" MetabolismAA BiosynAA Metab YJR139C HOM6 PMTR "PMTR and ORF Selected, ORF had High Control" 12.9 89% 0.98626209 0.94877793 0.97508984 0.697996718 0.071961115 0.22790007 iYJR139C iYJR138W iYJR139C iYJR138W TRUE FALSE PMTR ORF aa metabolism Homoserine dehydrogenase (L-homoserine MetabolismAA BiosynAA Metab methionine and threonine biosynthesis homoserine dehydrogenase YCL030C HIS4 PMTR "PMTR only Selected, ORF >0.9 but <.92" 9.4 86% 0.917384174 0.660482375 0.974354786 0.129203827 0.323788013 0.067251462 iYCL030C iYCL031C iYCL030C iYCL031C TRUE FALSE PMTR aa metabolism "Phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphohydrolase / histidinol dehydrogenase, second, third, and tenth steps of histidine biosynthesis pathway" MetabolismAA BiosynAA Metab histidine biosynthesis histidinol dehydrogenase YPL111W CAR1 ORF "ORF only Selected, Unexplained ORF" 8.1 84% 0.968531216 0.317434741 0.577330501 0.688328293 0.598570784 0.150331936 0.365241636 0.443841027 iYPL112C tM(CAU)P itM(CAU)P iYPL111W itM(CAU)P FALSE FALSE ORF aa metabolism "Arginase, catalyzes the first step in arginine degradation and acts as an allosteric regulator of ornithine carbamyltransferase" Cellular OrganizationMetabolismAA Metab arginine metabolism arginase YOR303W CPA1 HAND "No Fragment, Hand Selected" 7.6 83% 0.683860117 0.476855547 0.2709098 0.056035547 zzOverlaps ORF YOR302W iYOR303W YOR302W FALSE FALSE aa metabolism "Carbamoylphosphate synthase of the arginine biosynthetic pathway, amidotransferase small subunit" Cellular OrganizationMetabolismAA BiosynAA Metab arginine biosynthesis "carbamoyl phosphate synthetase, arginine specific" YDR408C ADE8 PMTR PMTR only Selected 4.9 75% 0.840769125 0.791991553 0.9351431 0.705277579 0.625312576 0.623078267 iYDR408C iYDR407C iYDR408C iYDR407C TRUE FALSE PMTR aa metabolism "Phosphoribosylglycinamide formyltransferase (GART), third step in de novo purine biosynthesis pathway" Cellular OrganizationMetabolism purine biosynthesis phosphoribosylglycinamide formyltransferase YDR300C PRO1 PMTR PMTR and ORF Selected 4.1 70% 0.968952516 0.679338435 0.980802672 0.342201956 0.225183916 0.105751391 iYDR300C iYDR299W iYDR300C iYDR299W TRUE FALSE PMTR ORF aa metabolism "Glutamate 5-kinase, carries out first step in proline biosynthesis pathway" Cellular OrganizationMetabolismAA BiosynAA Metab proline biosynthesis glutamate 5-kinase YCL025C AGP1 PMTR PMTR only Selected 3 62% 0.710335204 0.434317638 0.93869021 0.557252532 0.297406905 0.89273743 iYCL025C iYCL026C-A iYCL025C iYCL026C-A TRUE FALSE PMTR aa metabolism Broad substrate range amino acid permease with high affinity for asparagine and glutamine Cellular OrganizationMetabolismAA MetabTransport transport amino acid permease YLR438W CAR2 PMTR PMTR and ORF Selected 1.5 41% 0.965592089 0.490249321 0.969247087 0.563305394 0.169567421 0.143256809 iYLR437C iYLR437C iYLR438W iYLR438W TRUE FALSE PMTR ORF aa metabolism "Ornithine aminotransferase (ornithine oxo-acid aminotransferase), acts in the degradation of arginine, citrulline and ornithine" Cellular OrganizationMetabolismAA BiosynAA Metab arginine metabolism ornithine aminotransferase yhr033W YHR033W PMTR "PMTR only Selected, ORF >0.9 but <.92" 0.6 13% 0.91033014 0.67472119 0.978160266 0.682936701 0.443313462 0.316942455 iYHR032W iYHR032W iYHR033W iYHR033W TRUE FALSE PMTR aa metabolism similarity to Pro1p MetabolismAA BiosynAA Metab unknown unknown; similar to Pro1p YHL036W MUP3 HAND PMTR "No Fragment, Hand Selected, Ques Orf selected as PMTR" 0.5 10% 0.773970934 0.560255387 0.413917021 0.310925276 0.244494636 0.062666046 iYHL037C iYHL037C iYHL036W iYHL036W FALSE FALSE aa metabolism Low affinity methionine amino acid permease Cellular OrganizationIntra TransportMetabolismAA BiosynAA MetabTransport transport methionine permease YEL056W HAT2 PMTR "PMTR only Selected, ORF >0.9 but <.92" 4 70% 0.91996741 0.480606544 0.959510459 0.829347951 0.8471668 0.684751717 iYEL057C iYEL057C iYEL056W iYEL056W TRUE FALSE PMTR Chromatin HAT "Histone acetyltransferase subunit 2, contains seven WD (WD-40) repeats" "Cellular OrganizationTXNmRNA TXN, PROT Dist" chromatin structure histone acetyltransferase complex subunit YLR399C BDF1 PMTR "PMTR and ORF Selected, In a focus of other selected frags" High P CNTL 2.5 56% 0.946993909 0.844134078 0.999391224 0.893182656 0.951762523 0.865584836 iYLR399C iYLR398C iYLR399C iYLR398C TRUE FALSE PMTR ORF Chromatin "required for sporulation, has two bromodomain motifs and one ET domain" Cellular OrganizationCell GrowthTXNmRNA TXN meiosis putative chromatin component YPL082C MOT1 PMTR PMTR only Selected 2 50% 0.607770428 0.302852079 0.953480189 0.963957202 0.313815479 0.128651237 0.821085747 0.275873195 iYPL082C IntYPL081W iYPL083C iYPL082C iYPL083C TRUE TRUE PMTR Chromatin Pol II TXN Factor "Transcriptional Accessory (TAF) involved in RNA polymerase II transcriptional repression through interaction with TATA-binding protein (TBP), member of the Snf2p family of DNA helicases" Cellular OrganizationTXNmRNA TXN transcription putative helicase YDR448W ADA2 PMTR "PMTR and ORF Selected, ORF had High Control" 1.7 45% 0.984446701 0.956708902 0.981874847 0.759964064 0.633419272 0.14312703 iYDR447C iYDR447C iYDR448W iYDR448W TRUE FALSE PMTR ORF Chromatin HAT Component of two nucleosomal histone acetyltransferase complexes Cellular OrganizationTXNmRNA TXN chromatin structure histone acetyltransferase complex subunit YFL024C EPL1 PMTR PMTR only Selected 1.7 45% 0.518354192 0.430965682 0.922211429 0.395215713 0.001949318 0.514687731 iYFL024C iYFL025C iYFL024C iYFL025C TRUE FALSE PMTR Chromatin HAT "Member of NuA4 histone acetyltransferase complex, has similarity to Drosophila E(Pc) (Enhancer of Polycomb) protein" Unclassified unknown putative chromatin protein YDR392W SPT3 ORF ORF and UTR Selected 3' UTR is PMTR for she9 1.5 41% 0.983375911 0.631822865 0.851362871 0.98510363 0.438067785 0.204109812 iYDR391C iYDR391C iYDR392W iYDR392W FALSE FALSE ORF UTR Chromatin HAT "Component of the nucleosomal histone acetyltransferase (Spt-Ada-Gcn5-Acetyltransferase or SAGA) complex, member of TBP (TATA-binding protein) class of SPT proteins" Cellular OrganizationCell GrowthTXNmRNA TXN chromatin structure histone acetyltransferase complex subunit YDR325W YCG1 PMTR "PMTR only Selected, ORF >0.9 but <.92" 1.3 36% 0.909588182 0.721961656 0.98405641 0.634188194 0.604979053 0.392996293 iYDR324C iYDR324C iYDR325W iYDR325W TRUE FALSE PMTR Chromatin Mitosis Subunit of condensin protein complex required for proper chromosome condensation and segregation Cell Growth "mitosis, chromosome condensation (putative)" unknown; high copy suppressor of brn1 mutation YPL016W SWI1 PMTR PMTR only Selected 0.9 24% 0.558905849 0.166640064 0.983360545 0.138752077 0.179478906 0.266052721 iYPL017C iYPL017C iYPL016W iYPL016W TRUE FALSE PMTR Chromatin Pol II TXN Factor "Component of SWI-SNF global transcription activator complex, acts to assist gene-specific activators through chromatin remodeling" Cellular OrganizationCell GrowthMetabolismTXNmRNA TXN transcription component of SWI/SNF global activator complex YLR110C YLR110C ORF "ORF only Selected, Unexplained ORF" 183.5 100% 0.927300964 0.4867111 0.910306302 0.82510585 0.321599115 0.333630183 iYLR110C iYLR109W iYLR110C iYLR109W FALSE FALSE ORF Other Known Function Cell Wall Biogenisis "Cell wall mannosimilarity to Flo1p, Fig2p, Flo5p, Yal063p, and Ykr102p" Cell Bio unknown "unknown; similar to Flo1p, Fig2p, Flo5p, Yal063p, and Ykr102p" YCR024C-A PMP1 PMTR PMTR only Selected 38.7 96% 0.723775786 0.184481198 0.977070121 0.723467166 0.373104549 0.091620112 iYCR024C-A iYCR024C iYCR024C-A iYCR024C TRUE FALSE PMTR Other Known Function "Transport, Small Molecule PMA 1 Assoc." Plasma membrane proteolipid associated with Pma1p Cellular OrganizationIon HomeoTransport H+ homeostasis regulates plasma membrane H+-ATPase YLR286C CTS1 PMTR "PMTR and ORF Selected, Added 11-12-00, ORF and PMTR Selected" 28.1 95% 0.92171916 0.990830482 0.661822713 0.467828889 0.118756043 iYLR286C iYLR285W iYLR286C iYLR285W TRUE FALSE PMTR ORF Other Known Function Cell Wall Biogenisis Endochitinase Cellular OrganizationCell GrowthMetabolism YGR180C RNR4 PMTR "PMTR only Selected, ORF >0.9 but <.92" 15.8 91% 0.912420715 0.898132148 0.942690627 0.562148257 0.533175843 0.254061079 0.395051875 0.375010083 iYGR180C itL(CAA)G3 iYGR179C iYGR180C iYGR179C TRUE FALSE PMTR Other Known Function DNA Repair "Component of ribonucleotide reductase (ribonucleoside-diphosphate reductase) small subunit, which is comprised of an Rnr2p-Rnr4p heterodimer" Cell DeathCellular OrganizationCell GrowthMetabolism DNA replication ribonucleotide reductase YNL066W SUN4 PMTR PMTR only Selected 14.6 90% 0.548725142 0.76397624 0.92305359 0.37855929 0.659603609 0.572368962 iYNL067W iYNL067W iYNL066W iYNL066W TRUE FALSE PMTR Other Known Function "Cell Wall Biogenisis, aging" the aging process Cell DeathCellular OrganizationMetabolism aging unknown YFL014W HSP12 PMTR PMTR and ORF and UTR Selected 4.9 75% 0.944622299 0.279082678 0.962757269 0.954344985 0.294028273 0.720429199 iYFL015C iYFL015C iYFL014W iYFL014W TRUE FALSE PMTR ORF UTR Other Known Function glucose and lipid utilization "Heat shock 12 kDa, induced by heat, osmotic stress, oxidative stress and in stationary phase" Cell DeathCell CommMetabolism glucose and lipid utilization heat shock protein YNL154C YCK2 PMTR PMTR only Selected 4.9 75% 0.85790571 0.641420591 0.971615723 0.18580148 0.261208577 0.056165043 iYNL154C iYNL155W iYNL154C iYNL155W TRUE FALSE PMTR Other Known Function "Transport, PMA1 kinase" Casein kinase I isoform Cell DeathCellular OrganizationIntra TransportCell Growth unknown protein kinase YJR058C APS2 PMTR PMTR and ORF Selected 4.6 73% 0.968200095 0.704191033 0.983866033 0.913342595 0.144737925 0.704708699 iYJR058C YJR057W iYJR058C YJR057W TRUE FALSE PMTR ORF Other Known Function "Transport, Clathrin" "Clathrin-associated protein (AP) complex, small subunit" "Cellular OrganizationIntra Transport, PROT Dist" secretion AP-1 complex subunit YDL188C PPH22 PMTR PMTR only Selected 3.8 69% 0.891775595 0.714018843 0.990657068 0.806554736 0.905376868 0.262729987 iYDL188C iYDL189W iYDL188C iYDL189W TRUE FALSE PMTR Other Known Function Cell Cycle "serine/threonine phosphatase PP2A-2, highly homologous to Pph21p, member of the PPP family of protein phosphatases" Cell BioCell GrowthMetabolism cell cycle protein phosphatase 2A YOR101W RAS1 PMTR PMTR only Selected 3.8 69% 0.690904253 0.442365088 0.957059997 0.695441274 0.14051332 0.265602554 iYOR100C iYOR100C iYOR101W iYOR101W TRUE FALSE PMTR Other Known Function "Signal Transduction, Aging" "GTP-binding regulation of cAMP pathway, homolog of mammalian proto-oncogene ras" Cell DeathCell CommCellular OrganizationCell GrowthMetabolism "signaling, Ras pathway" "GTP-binding protein, ras homolog" YLR403W SFP1 PMTR PMTR only Selected 3.1 63% 0.812303583 0.84660814 0.970000438 0.576180975 0.538356054 0.332703452 iYLR402W iYLR402W iYLR403W iYLR403W TRUE FALSE PMTR Other Known Function Pol II TXN Factor "Zinc finger nuclear protein localization, three dispersed C2H2-type zinc fingers" Cellular OrganizationCell Growth unknown overexpression inhibits nuclear protein localization YNL216W RAP1 PMTR "PMTR and ORF Selected, ORF had High Control" 2.9 61% 0.921957156 0.925925926 0.970484452 0.288464717 0.164849021 0.279648843 iYNL217W iYNL217W iYNL216W iYNL216W TRUE FALSE PMTR ORF Other Known Function Pol II TXN Factor "DNA-binding repressor and activator activities, also involved in silencing at telomeres and silent mating type loci" "Cell BioCellular OrganizationCell GrowthMetabolism, PROT SYN, rRNA TXNmRNA TXN" transcription transcriptional repressor and activator YOR043W WHI2 HAND UTR only Selected 2.8 60% 0.860692893 0.822757653 0.751633453 0.97194488 0.599174936 0.65408805 0.909153887 iYOR042W SNR62 iSNR62 iYOR043W iSNR62 FALSE FALSE UTR Other Known Function "Cell Cycle, Growth" growth regulation Cell Growth cell size unknown YIL121W YIL121W PMTR "PMTR only Selected, High ORF Control" 2.8 60% 0.893011028 0.946922643 0.935970555 0.342674165 0.59187032 0.2620218 iYIL122W iYIL122W iYIL121W iYIL121W TRUE FALSE PMTR Other Known Function "Transport, Small Molecule" Member of the multidrug-resistance 12-spanner family of the major facilitator superfamily (MFS-MDR) Cell DeathTransport unknown major facilitator superfamily YLR256W HAP1 PMTR PMTR only Selected 2.7 58% 0.799147743 0.526426039 0.923474956 0.783816113 0.12901318 0.705088302 iYLR255C iYLR255C iYLRWdelta14 iYLRWdelta14 TRUE FALSE PMTR Other Known Function Pol II TXN Factor "Transcription factor with heme-dependent DNA-binding activity, responsible for heme-dependent activation of many genes" Cellular OrganizationTXNmRNA TXN transcription heme-dependent transcription factor YLR452C SST2 PMTR PMTR and ORF Selected "PMTR high cntl, but added back on 11-22-00 on basis of CNTL re-amps and ORF selection" 2.4 55% 0.924525419 0.832169495 0.990278156 0.795651525 0.927613727 0.434213024 IYLR452C iYLR451W iYLR452C iYLR451W TRUE FALSE PMTR ORF Other Known Function mating desensitization to alpha-factor pheromone mating negative regulator of Gpa1 YBL061C SKT5 PMTR PMTR only Selected 2.3 54% 0.826273495 0.54301676 0.97432819 0.594667133 0.851998066 0.451740251 iYBL061C YBL062W iYBL061C YBL062W TRUE FALSE PMTR Other Known Function Cell Wall Biogenisis "Protoplast regeneration and killer toxin resistance protein, required for chitin synthase III activity" Cell BioMetabolism cell wall biogenesis chitin synthase regulator YEL022W GEA2 PMTR PMTR only Selected 2.2 52% 0.711407145 0.150050693 0.986360315 0.513197564 0.809018356 0.451673164 iYEL023C iYEL023C iYEL022W iYEL022W TRUE FALSE PMTR Other Known Function "Transport, ER to Golgi" Component of complex with guanine-nucleotide-exchange activity for ARF Cellular OrganizationIntra Transport secretion GDP/GTP exchange factor for ARF YGR258C RAD2 PMTR PMTR only Selected 2 50% 0.546212594 0.275056397 0.962064635 0.356930106 0.34824562 0.522303783 0.294641216 0.179419986 iYGR258C-0 iYGR258C-1 iYGR257C iYGR258C-0 iYGR257C TRUE FALSE PMTR Other Known Function DNA Repair Structure-specific single-stranded DNA endonuclease of the nucleotide excision repairosome Cell DeathCellular OrganizationCell Growth "DNA repair, nucleotide excision" single-stranded DNA endonuclease YPR029C APL4 PMTR PMTR only Selected 1.9 48% 0.743767935 0.600789558 0.972814298 0.55021101 0.657417117 0.310103126 iYPR029C iYPR028W iYPR029C iYPR028W TRUE FALSE PMTR Other Known Function "Transport, Clathrin" "Gamma-adaptin, large subunit of the clathrin-associated protein (AP) complex" "Intra Transport, PROT Dist" secretion AP complex subunit YDR189W SLY1 HAND "No Fragment, Hand Selected" 1.9 48% 0.66881738 0.38706218 0.67368349 0.577372055 0.282189929 0.261119661 iYDR188W iYDR188W iYDR189W iYDR189W FALSE FALSE Other Known Function "Transport, Vesicle Traffic" "vesicle trafficking between endoplasmic reticulum and Golgi, member of the Sec1p family, mutant shows severely depressed levels of rRNA transcripts and of ribosomal protein gene mRNAs, due to an unidentified regulatory link between the secretory pathway and ribosome biogenesis" Cellular OrganizationIntra Transport secretion SNARE docking complex subunit YLR103C CDC45 PMTR PMTR only Selected 1.8 46% 0.870188304 0.590800625 0.976071294 0.798622588 0.71124718 0.182341809 iYLR103C iYLR102C iYLR103C iYLR102C TRUE FALSE PMTR Other Known Function "Cell Cycle, DNA Replication" required for initiation of chromosomal DNA replication Cellular OrganizationCell Growth DNA replication pre-replicative complex subunit (putative) YJR132W NMD5 PMTR PMTR only Selected 1.8 46% 0.684075057 0.569038337 0.929675008 0.431331066 0.358053809 0.23025856 iYJR131W iYJR131W iYJR132W iYJR132W TRUE FALSE PMTR Other Known Function "Transport, Nuclear Pore" Member of the karyopherin-beta family; involved in nuclear transport Metabolism unknown Nam7p/Upf1p-interacting protein YHL046C YHL046C PMTR "PMTR only Selected, ORF >0.9 but <.92" 1.6 43% 0.919336056 0.608856982 0.940629956 0.45790837 0.389762404 0 iYHL046C iYHL047C-1 iYHL046C iYHL047C-1 TRUE FALSE PMTR Other Known Function Cell Wall Biogenisis Member of the seripauperin (PAU) family Cell Death unknown unknown; similar to members of the Srp1p/Tip1p family YLR389C STE23 PMTR PMTR only Selected 1.6 43% 0.890761858 0.918534763 0.961941516 0.568588286 0.709795322 0.29189494 iYLR389C iSNR34 iYLR389C iSNR34 TRUE FALSE PMTR Other Known Function mating Protease involved in a-factor processing; has similarity to Axl1p and human and Drosophila insulin-degrading enzymes "Cell Growth, PROT Dist" mating a-factor processing protease (putative) YNL329C PEX6 PMTR PMTR only Selected 1.5 41% 0.963249037 0.677820244 0.22417154 0.538526529 iYNL329C iYNL330C iYNL329C iYNL330C TRUE FALSE PMTR Other Known Function Peroxisome Peroxisomal biogenesis protein (peroxin) of the AAA family of ATPases "Cellular Organization, PROT Dist" peroxisome biogenesis ATPase (putative) YMR100W MUB1 PMTR PMTR only Selected 1.4 39% 0.845603937 0.745659508 0.941633151 0.466155831 0.461303284 0.490976474 iYMR099C iYMR099C iYMR100W iYMR100W TRUE FALSE PMTR Other Known Function mating "Zinc finger protein, involved in the regulation of bud site selection" Cell Growth bud site selection unknown YAL051W OAF1 PMTR PMTR only Selected 1.4 39% 0.609692613 0.442294694 0.975823088 0.532979358 0.236537861 0.422972241 iYAL053W iYAL053W iYAL051W iYAL051W TRUE FALSE PMTR Other Known Function Pol II TXN Factor "Transcription factor required for induction of POX1 on oleate-containing medium, plays a role in peroxisome proliferation" Cellular OrganizationMetabolismTXNmRNA TXN peroxisome proliferation transcriptional activator of POX1 YKL040C NFU1 PMTR PMTR only Selected 1.3 36% 0.37532883 0.541017988 0.956349534 0.298203011 0.622085355 0 iYKL040C iYKL041W iYKL040C iYKL041W TRUE FALSE PMTR Other Known Function "Mitochondrial, slow growth on Lactate, glycerol" similarity to Anabaena nitrogen fixing protein nifU Metabolism iron homeostasis unknown; similar to Anabaena nitrogen fixing protein nifU YNL325C FIG4 ORF "ORF only Selected, Unexplained ORF" 1.1 30% 0.994607179 0.046728972 0.52948983 0.286062378 zzOverlaps ORF iYNL326C YNL324W iYNL326C FALSE FALSE ORF Other Known Function mating Suppressor of sac1 mutation and protein induced by mating factor Cell CommIntra Transport mating (putative) unknown; induced by mating factor YGL073W HSF1 ORF ORF and UTR Selected 1 27% 0.977167142 0.589587394 0.968592774 0.485412299 zzOverlaps ORF YGL074C YGL072C YGL074C FALSE FALSE ORF UTR Other Known Function Pol II TXN Factor Heat shock transcription factor that binds to the heat shock DNA element at both normal and elevated temperatures Cell DeathCellular OrganizationCell GrowthTXNmRNA TXN heat shock transcription factor YGL071W RCS1 PMTR PMTR only Selected 1 27% 0.871784843 0.609327475 0.975433755 0.659462522 0.400096681 0.17500943 iYGL072C iYGL072C iYGL071W iYGL071W TRUE FALSE PMTR Other Known Function Pol II TXN Factor Transcription factor that regulates genes involved in iron uptake and control of cell size Cellular OrganizationIon HomeoTXNmRNA TXN iron transport transcriptional activator YLR310C CDC25 PMTR PMTR only Selected 1 27% 0.482452555 0.218754988 0.98865422 0.911036926 0.325785738 0.752445842 iYLR310C iYLR309C iYLR310C iYLR309C TRUE FALSE PMTR Other Known Function "Signal Transduction, GNEP for RAS1" "Guanine-nucleotide exchange protein for Ras1p and Ras2p, has an SH3 domain" Cell CommCellular OrganizationIon HomeoCell GrowthMetabolism signaling GDP/GTP exchange factor for Ras1p and Ras2p YJL090C DPB11 PMTR PMTR only Selected 0.9 24% 0.814265406 0.735833998 0.975509344 0.679580421 0.577893057 0.617202729 iYJL090C iYJL091C iYJL090C iYJL091C TRUE FALSE PMTR Other Known Function "Cell Cycle, DNA Replication" DNA replication and an S-phase checkpoint function Cellular OrganizationCell Growth DNA replication DNA polymerase II complex YPR161C SGV1 PMTR "PMTR only Selected, ORF >0.9 but <.92" 0.9 24% 0.919079913 0.183338966 0.98810114 0.772047437 0.646793426 0.416290686 iYPR161C iYPR160W iYPR161C iYPR160W TRUE FALSE PMTR Other Known Function mating Serine/threonine protein kinase involved in pheromone adaptation pathway and in cell cycle Cell Growth cell cycle protein kinase YGL075C MPS2 PMTR "PMTR and ORF and UTR Selected, ORF and PMTR Selected, Upst Ribo" 0.5 10% 0.964386052 0.769353551 0.963078365 0.92733753 0.341893781 0.383365822 iYGL075C iYGL076C iYGL075C iYGL076C TRUE FALSE PMTR ORF UTR Other Known Function "Cell Cycle, Spindle Pole Body" nuclear envelope/endoplasmic reticulum required for spindle pole body assembly and normal chromosome segregation Cell Growth cytoskeleton spindle pole body duplication; nuclear envelope/ER protein YNL025C SSN8 HAND "No Fragment, Hand Selected" 0.2 1% 0.527429815 0.67193039 0.885775978 0.870942204 0.785164688 0.541990537 0.697309056 0.660654429 iYNL025C SNR66 iYNL026W iYNL025C iYNL026W FALSE FALSE Other Known Function Pol II TXN Factor "Cyclin C homolog, component of RNA polymerase holoenzyme complex and Kornberg's mediator (SRB) subcomplex" Cellular OrganizationCell GrowthMetabolismTXNmRNA TXN transcription RNA polymerase II mediator subunit YBL088C TEL1 PMTR PMTR only Selected 0.2 1% 0.699033856 0.564373187 0.771712856 0.960251983 0.437995791 0.31580221 0.663786719 0.483160415 iYBL088C IntYBL087C iYBL089W iYBL088C iYBL089W FALSE TRUE PMTR Other Known Function Telomere length Phosphatidylinositol 3-kinase (PI kinase) homolog involved in controlling telomere length Cell BioCell GrowthMetabolism telomere length regulation putative phosphatidylinositol kinase YKR102W FLO10 PMTR "PMTR only Selected, Added 11-13-00" 5' of SIR1 0.1 0% 0.263718186 0.933569401 0.624687518 0.494306093 0.548842777 0.469934774 0.25168976 iYKR101W-0 iYKR101W-1 iYKR101W-2 iYKR102W-0 iYKR101W-2 TRUE FALSE PMTR Other Known Function Cell Wall Biogenisis Cell wall manno. similarity to Flo1p YOL161C YOL161C ORF ORF and UTR Selected 0.921578331 0.526782697 0.649630918 0.984745335 0.124742862 0.241390513 iYOL161C-0 iYOL161C-1 iYOL162W iYOL161C-0 iYOL162W FALSE FALSE ORF UTR Other Known Function Cell Wall Biogenisis Member of the seripauperin (PAU) family; subtelomerically-encoded Cell Death unknown unknown; similar to PAU1 family YFL051C YFL051C PMTR "PMTR only Selected, Added 11-13-00, Half of PMTR selected" 0.368053448 0.776315789 0.434731635 0.94103438 0.333556743 0.03617467 0.231507623 0.278202913 iYFL051C-0 iYFL051C-1 iYFL052W iYFL051C-0 iYFL052W FALSE TRUE PMTR Other Known Function Cell Wall Biogenisis similarity to Flo1p family of proteins Cellular Organization YKL178C STE3 PMTR "ORF only Selected, ORF and PMTR Selected" 0.94114454 0.95385552 0.551364521 0.65911306 zzOverlaps ORF iYKL179C YKL177W iYKL179C FALSE FALSE ORF Other Known Function mating "Pheromone a-factor G protein-coupled receptor (GPCR), member of the GPCR or seven transmembrane segments (7-TMS) superfamily" Cell CommCellular OrganizationCell Growth mating a-factor receptor YDL130W-A STF1 PMTR "PMTR and ORF and UTR Selected, Added 11-13-00" 0.962267233 0.929222636 0.962267233 0.756848211 0.328560849 iYDL131W iYDL131W YDL130W-A YDL130W-A TRUE FALSE PMTR ORF UTR Other Known Function Mitochondrial "ATPase stabilizing factor, can stabilize the ATPase-inhibitor complex" Cellular OrganizationEnergyRespiration YOR100C CRC1 PMTR PMTR and ORF Selected 0.946631959 0.500241702 0.957059997 0.694296274 0.14051332 0.124281852 iYOR100C iYOR099W iYOR100C iYOR099W TRUE FALSE PMTR ORF Other Known Function Mitochondrial Transport "Mitochondrial carnitine carrier, member of the mitochondrial carrier (MCF) family" Intra Transport transport mitochondrial carnitine carrier YJR140C HIR3 ORF ORF and UTR Selected 0.937968193 0.516052721 0.56016081 0.97508984 0.301401869 0.071961115 iYJR140C iYJR139C iYJR140C iYJR139C FALSE FALSE ORF UTR Other Known Function Pol II TXN Factor Histone transcription regulator Cell GrowthTXNmRNA TXN transcription regulator of histone transcription YNL309W STB1 HAND UTR only Selected 0.182426902 0.104210342 0.924703343 0.470679012 zzOverlaps ORF YNL310C iYNL309W YNL310C FALSE FALSE UTR Other Known Function Pol II TXN Factor "Sin3p-binding protein, involved in transcription regulation at Start in the absence of Cln3p" TXNmRNA TXN unknown binds Sin3p YLR004C YLR004C ORF "ORF only Selected, Unexplained ORF" 0.939797383 0.752359442 0.857989891 0.756237791 0.334814449 0.166290682 iYLR004C iYLR003C iYLR004C iYLR003C FALSE FALSE ORF Other Known Function "Transport, Small Molecule" similarity to Dal5p and other members of the allantoate permease family of the major facilitator superfamily (MFS) Transport unknown unknown; similar to allantoate transport protein YDR040C ENA1 PMTR PMTR only Selected 0.703868518 0.334320744 0.973324248 0.702074356 0.397645601 0.92345387 iYDR040C iYDR039C iYDR040C iYDR039C TRUE FALSE PMTR Other Known Function "Transport, Small Molecule" "P-type ATPase involved in Na+ and Li+ efflux, required for Na+ tolerance" Cellular OrganizationIntra TransportIon HomeoTransport transport plasma membrane ATPase YJR059W PTK2 PMTR "PMTR only Selected, ORF >0.9 but <.92" 0.913919487 0.344518835 0.983866033 0.312285972 0.144737925 0.034241789 iYJR058C iYJR058C iYJR059W iYJR059W TRUE FALSE PMTR Other Known Function "Transport, Small Molecule" Serine/threonine protein kinase required for high-affinity polyamine transport Cell CommIntra Transport polyamine transport ser/thr protein kinase YBL022C PIM1 PMTR PMTR and ORF Selected 5.2 76% 0.933206917 0.681598453 0.99363863 0.735302988 0.663568773 0.650688183 iYBL022C iYBL023C iYBL022C iYBL023C TRUE FALSE PMTR ORF Protein Synthesis Mitochondrial Prot. Synthesis "Serine protease required for intramitochondrial proteolysis and maintenance of respiratory function, related to E. coli ATP-dependent protease La, member of the AAA+ family of putative ATPases" "Cellular OrganizationTXNmRNA TXN, PROT Dist" respiration mitochondrial ATP-dependent protease YJL133W MRS3 PMTR PMTR only Selected 4.2 71% 0.980153545 0.599637604 0.187106918 0.522155978 iYJL134W iYJL134W iYJL133W iYJL133W TRUE FALSE PMTR Protein Synthesis Mitochondrial Prot. Synthesis "Splicing protein and member of the mitochondrial carrier (MCF) family, suppresses mitochondrial splicing defects" Cellular OrganizationIntra TransportTXNmRNA TXN transport mitochondrial carrier YJL096W MRPL49 ORF "ORF and UTR Selected, Unexplained ORF" 3.7 68% 0.972984949 0.784643893 0.976606767 0 zzOverlaps ORF YJL097W iYJL096W YJL097W FALSE FALSE ORF UTR Protein Synthesis Mitochondrial Prot. Synthesis Mitochondrial ribosomal the large subunit (YmL49) "Cellular Organization, PROT SYN" protein synthesis "ribosomal protein, mitochondrial L49" YDR041W YDR041W PMTR PMTR only Selected 3.4 66% 0.842492574 0.776426039 0.973324248 0.852753765 0.397645601 0.768153153 iYDR040C iYDR040C iYDR041W iYDR041W TRUE FALSE PMTR Protein Synthesis Mitochondrial Prot. Synthesis Putative mitochondrial ribosomal protein ", PROT SYN" protein synthesis "ribosomal protein, mitochondrial" YGR084C MRP13 PMTR PMTR only Selected 3.4 66% 0.849622465 0.819926779 0.928789504 0.640582732 0.695458552 0.540686432 iYGR084C iYGR083C iYGR084C iYGR083C TRUE FALSE PMTR Protein Synthesis Mitochondrial Prot. Synthesis Mitochondrial ribosomal the small subunit "Cellular Organization, PROT SYN" protein synthesis "ribosomal protein, mitochondrial small subunit" YMR225C MRPL44 ORF ORF and UTR Selected 3' UTR is PMTR for MRE11 2.6 57% 0.940911649 0.520045514 0.801845556 0.96405105 0.662470172 0.319285897 iYMR225C iYMR224C iYMR225C iYMR224C FALSE FALSE ORF UTR Protein Synthesis Mitochondrial Prot. Synthesis Mitochondrial ribosomal the large subunit (YmR44) "Cellular Organization, PROT SYN" protein synthesis "ribosomal protein, mitochondrial L44" YHR091C MSR1 PMTR PMTR only Selected 1.9 48% 0.7250558 0.899691358 0.958591963 0.340578368 0.121018611 0.478055959 iYHR091C iYHR090C iYHR091C iYHR090C TRUE FALSE PMTR Protein Synthesis Mitochondrial Prot. Synthesis Arginyl-tRNA synthetase of mitochondria "Cellular Organization, PROT SYN" protein synthesis "tRNA synthetase, arginyl" YFL016C MDJ1 PMTR PMTR only Selected 1.3 36% 0.691208593 0.2406314 0.922973658 0.247979458 0.37600709 0.055335968 iYFL016C iYFL017C iYFL016C iYFL017C TRUE FALSE PMTR Protein Synthesis Mitochondrial Prot. Synthesis "mitochondrial biogenesis and protein folding, member of DnaJ family of protein chaperones" "Cell DeathCellular Organization, PROT Dist" protein folding chaperone; DnaJ homolog YHL038C CBP2 ORF "ORF only Selected, Unexplained ORF" 0.944675191 0.745457722 0.903132757 0.612871611 0.013741463 0.369277644 iYHL038C iYHL039W iYHL038C iYHL039W FALSE FALSE ORF Protein Synthesis Mitochondrial Prot. Synthesis required for splicing of the COB aI5 intron and for efficient splicing of 21S mitochondrial rRNA (LSU) intron Cellular OrganizationTXNmRNA TXN "mRNA splicing, COB mRNA" pre-mRNA binding protein YPL190C NAB3 PMTR PMTR only Selected 1.2 33% 0.156170619 0.079577219 0.933818228 0.096765762 0.302875244 0.021848603 iYPL190C iYPL191C iYPL190C iYPL191C TRUE FALSE PMTR Protein Synthesis mRNA processing Nuclear polyadenylated RNA-binding one RNA recognition (RRM) domain Cellular OrganizationTXNmRNA TXN mRNA splicing nuclear polyadenylated RNA-binding protein YDR301W CFT1 PMTR PMTR only Selected 1.1 30% 0.662098002 0.592732839 0.980802672 0.374938175 0.225183916 0.319688109 iYDR300C iYDR300C iYDR301W iYDR301W TRUE FALSE PMTR Protein Synthesis mRNA processing Component of pre-mRNA cleavage factor II Cellular OrganizationTXNmRNA TXN mRNA 3'-end processing cleavage/polyadenylation factor CF II component YER032W FIR1 PMTR PMTR and ORF Selected 0.6 13% 0.957366351 0.647921366 0.969337599 0.568775501 0.112043236 0.179769392 iYER031C iYER031C iYER032W iYER032W TRUE FALSE PMTR ORF Protein Synthesis mRNA processing "probably involved in 3'-mRNA processing; interacts with Pap1p and Ref2p," TXNmRNA TXN mRNA 3'-end processing unknown LSR1 LSR1 PMTR "No Fragment, Hand Selected, Added 11-10-00" Promoter is iLSR1 and YBR231C 0.893120389 0.094700331 0.066963352 0.007512229 iYBR230C iLSR1 iYBR230C FALSE FALSE Protein Synthesis mRNA processing u2 sRNA Unclassified YPL227C ALG5 PMTR PMTR and ORF Selected 8.1 84% 0.96980735 0.955560952 0.862222944 0.323463687 0.437539785 iYPL227C iYPL228W iYPL227C iYPL228W TRUE FALSE PMTR ORF Protein Synthesis protein modification Dolichol-P-glucose synthetase "Cellular OrganizationMetabolism, PROT Dist" protein glycosylation UDP-glucose:dolichyl-phosphate glucosyltransferase YBL020W RFT1 PMTR PMTR only Selected 3 62% 0.894994051 0.834879406 0.951460901 0.72724519 0.56473133 0.526017558 iYBL021C iYBL021C iYBL020W iYBL020W TRUE FALSE PMTR Protein Synthesis protein modification nuclear division Cellular OrganizationCell Growth cell cycle unknown YBL082C RHK1 PMTR "PMTR only Selected, Added 11-10-00" 1.5 41% 0.823183727 0.939385673 0.596045184 0.454851983 0.553843672 iYBL082C YBL083C iYBL082C YBL083C TRUE FALSE PMTR Protein Synthesis protein modification "Mannosyltransferase involved in N-glycosylation, Hansenula mrakii HM-1 killer toxin resistance protein" Cellular OrganizationMetabolismProt Dist YGL142C GPI10 PMTR "PMTR only Selected, Added 11-10-00" 1.3 36% 0.308638987 0.977497167 0.273250389 0.122274336 0.112591548 iYGL142C iYGL143C iYGL142C iYGL143C TRUE FALSE PMTR Protein Synthesis protein modification glycosyl phosphatidylinositol (GPI) synthesis Cell BioMetabolism YPR103W PRE2 PMTR "PMTR and ORF Selected, Upst Ribo" 18.6 93% 0.966280137 0.448448943 0.993661589 0.449719411 0.262011173 0.072124756 iYPR102C iYPR102C iYPR103W iYPR103W TRUE FALSE PMTR ORF Protein Synthesis protein turnover "Proteasome subunit beta5_sc (protease yscE subunit Pre2/Prg1), involved in chymotrypsin-like activity of the proteasome" "Cellular OrganizationCell Growth, PROT Dist" protein degradation 20S proteasome subunit (beta5) YDR188W CCT6 HAND PMTR ORF and UTR Selected 18.2 93% 0.972071621 0.86063191 0.972991508 0.406384677 zzOverlaps ORF YDR187C iYDR188W YDR187C FALSE FALSE ORF UTR Protein Synthesis protein turnover "Component of chaperonin-containing T-complex (TCP ring complex, TRiC); distantly related to Tcp1p and to Hsp60 family" "Cellular Organization, PROT Dist" protein folding cytoplasmic chaperonin complex yor056c YOR056C PMTR PMTR only Selected 6.4 80% 0.407804086 0.099680766 0.96074641 0.33044793 0.573534151 0.314631189 iYOR056C iYOR055W iYOR056C iYOR055W TRUE FALSE PMTR Protein Synthesis protein turnover associates with the 26S proteasome Unclassified unknown unknown YLL039C UBI4 PMTR PMTR only Selected 4.1 70% 0.897547077 0.883650128 0.967851759 0.564270682 0.778508772 0.298006636 iYLL039C iYLL040C iYLL039C iYLL040C TRUE FALSE PMTR Protein Synthesis protein turnover "Ubiquitin polyprotein, mature ubiquitin is cleaved from polyubiquitin (Ubi4p) or from fusions with ribosomal proteins Rps31p, Rpl40Ap, or Rpl40Bp" "Cell DeathCellular OrganizationCell Growth, PROT SYN, PROT Dist" "protein degradation, ubiquitin-mediated" ubiquitin YOR124C UBP2 PMTR "PMTR only Selected, Added 11-9-00" 2.4 55% 0.624929216 0.982807296 0.17905721 0.775856045 0.141081871 iYOR124C iYOR123C iYOR124C iYOR123C TRUE FALSE PMTR Protein Synthesis protein turnover "Ubiquitin-specific protease (ubiquitin C-terminal hydrolase), cleaves at the C-terminus of ubiquitin" Cellular OrganizationProt Dist YOR057W SGT1 PMTR PMTR only Selected 1.2 33% 0.891694998 0.96074641 0.408996876 0.573534151 0.195903351 iYOR056C iYOR056C iYOR057W iYOR057W TRUE FALSE PMTR Protein Synthesis protein turnover "Subunit of SCF ubiquitin ligase complex, essential for kinetochore assembly" Unclassified mitosis (putative) unknown; suppresses skp1 mutation YNR069C YNR069C PMTR PMTR only Selected 0.1 0% 0.820312639 0.733725901 0.971946364 0.883135635 0.614045487 0.896442495 0.27326586 0.406219787 iYNR069C-0 iYNR069C-1 iYNR068C iYNR069C-0 iYNR068C TRUE FALSE PMTR Protein Synthesis protein turnover "similarity to Bul1p ubiquitin ligase binding protein, may be a pseudogene or separated from YNR068C by sequencing errors" PROT Dist unknown unknown YGL141W HUL5 PMTR "PMTR only Selected, Added 11-10-00" 0.527758197 0.977497167 0.148858669 0.122274336 0.141182488 iYGL142C iYGL142C iYGL141W iYGL141W TRUE FALSE PMTR Protein Synthesis protein turnover Putative ubiquitin-protein ligase TXNmRNA TXN YGR159C NSR1 HAND "No Fragment, Hand Selected" 43.4 96% 0.613182408 0.196169194 0.65958837 0.774411859 zzOverlaps ORF iYGR158C YGR160W iYGR158C FALSE FALSE Protein Synthesis rRNA synthesis "Nucleolar processing 20S to 18S rRNA, has 2 RNA recognition (RRM) domains and is member of GAR (glycine/arginine-rich repeats) family of proteins" "Cell DeathCellular Organization, rRNA TXN" nuclear protein targeting NLS-binding protein YPR110C RPC40 PMTR PMTR only Selected 17.8 92% 0.875906003 0.51707901 0.953609909 0.529744924 0.316850851 0.218063535 iYPR110C iYPR109W iYPR110C iYPR109W TRUE FALSE PMTR Protein Synthesis rRNA synthesis Shared subunit of RNA polymerases I and III "Cellular Organization, rRNA tRNATXN" transcription RNA polymerase III 40 kD subunit YNL151C RPC31 PMTR "No Fragment, Hand Selected, Added 11-10-00" "Promoter is YNL149C, YNL150W" 12.7 89% 0.32137578 0.901574989 0.19268032 0.251013923 0.043853072 iYNL151C iYNL152W iYNL151C iYNL152W FALSE FALSE Protein Synthesis rRNA synthesis "RNA polymerase III, small subunit, essential subunit, not shared" Cellular OrganizationrRNAtRNATXN YMR229C RRP5 PMTR PMTR only Selected 8.5 84% 0.617939924 0.580368859 0.98122463 0.727586302 0.658949746 0.664437641 iYMR229C iYMR228W iYMR229C iYMR228W TRUE FALSE PMTR Protein Synthesis rRNA synthesis required for processing of pre-rRNA to 18S and 5.8S rRNA "Cellular Organization, rRNA TXN" rRNA processing unknown; required for pre-rRNA cleavage YOR340C RPA43 PMTR PMTR only Selected 8.1 84% 0.869044945 0.458414555 0.960055208 0.659511577 0.723278203 0.224285646 iYOR340C iYOR339C iYOR340C iYOR339C TRUE FALSE PMTR Protein Synthesis rRNA synthesis RNA polymerase I subunit; not shared with other polymerases "Cellular Organization, rRNA TXN" transcription RNA polymerase I 36 kD subunit YOR341W RPA190 PMTR PMTR only Selected 7 81% 0.649767524 0.299707602 0.960055208 0.42460453 0.723278203 0.117877095 iYOR340C iYOR340C iYOR341W iYOR341W TRUE FALSE PMTR Protein Synthesis rRNA synthesis RNA polymerase I largest subunit "Cellular Organization, rRNA TXN" transcription RNA polymerase I 190 kD subunit YJL025W RRN7 HAND "No Fragment, Hand Selected" 1.2 33% 0.49181337 0.233126324 0.611654638 0.752808294 0.204511242 0.653641637 iYJL026W iYJL026W iYJL025W iYJL025W FALSE FALSE Protein Synthesis rRNA synthesis Component of RNA polymerase I core transcription factor (CF) along with Rrn6p and Rrn11p "Cellular Organization, rRNA TXN" transcription component of rDNA transcription factor YDL229W SSB1 PMTR PMTR only Selected 152.9 100% 0.652156158 0.507519432 0.926610881 0.261110719 0.704681972 0.20094217 iYDL230W iYDL230W YDL228C YDL228C TRUE FALSE PMTR Protein Synthesis translation "Heat shock HSP70 family, involved with the translational machinery" "Cellular Organization, PROT SYN" translation cytosolic HSP70 YMR116C ASC1 PMTR PMTR only Selected 124 99% 0.893521971 0.871680643 0.948851403 0.684394413 0.900765243 0.187478878 iYMR116C iYMR115W iYMR116C iYMR115W TRUE FALSE PMTR Protein Synthesis translation "Abundant effects on translational efficiency and cell size, has two WD (WD-40) repeats" "Cellular OrganizationEnergy, PROT SYN" protein synthesis (putative) G-beta like protein YPR080W TEF1 PMTR PMTR and ORF Selected 106.7 99% 0.952291632 0.793103448 0.996651421 0.753610034 0.108430799 0.182951701 iYPR079W iYPR079W iYPR080W iYPR080W TRUE FALSE PMTR ORF Protein Synthesis translation "Translation elongation factor EF-1alpha, identical to Tef2p" "Cellular Organization, PROT SYN" protein synthesis translation elongation factor EF-1 alph YBR118W TEF2 PMTR PMTR and ORF Selected 89.6 98% 0.96135838 0.778387969 0.987106709 0.828128917 0.476502446 0.485623782 iYBR117C iYBR117C iYBR118W iYBR118W TRUE FALSE PMTR ORF Protein Synthesis translation "Translation elongation factor EF-1alpha, identical to Tef1p" protein synthesis translation elongation factor EF-1 alpha YEL034W HYP2 PMTR PMTR and ORF Selected 50.9 97% 0.96668205 0.853996935 0.954231369 0.876884983 0.347897638 0.615239036 iYEL035C iYEL035C YEL033W YEL033W TRUE FALSE PMTR ORF Protein Synthesis translation Translation initiation factor eIF5A; contains essential hypusine modification "Cellular OrganizationMetabolism, PROT SYN" protein synthesis translation initiation factor eIF5A YKR092C SRP40 PMTR PMTR only Selected 6.3 79% 0.670462679 0.30931167 0.980492887 0.721771985 0.8389423 0.346938776 0.712027103 0.408220271 iYKR092C-0 iYKR092C-1 iYKR091W iYKR092C-0 iYKR091W TRUE FALSE PMTR Protein Synthesis translation Suppressor of rpc40 and rpb10 mutations Cellular OrganizationTXN transcription (putative) Suppressor of mutant AC40 subunit of RNA polymerase I and III YDL031W DBP10 HAND PMTR "No Fragment, Hand Selected" 5.1 75% 0.495007989 0.43973574 0.782064598 0.552429027 0.562071469 0.584818309 iYDL032W iYDL032W iYDL031W iYDL031W FALSE FALSE Protein Synthesis translation "Putative RNA helicase involved in ribosome biogenesis, has similarity to RNA helicases of DEAD/DEAH box family" TXN unknown unknown; similar to RNA helicases YCL037C SRO9 PMTR PMTR and ORF Selected 1.7 45% 0.926198309 0.051674484 0.960346205 0.821969829 0.151642208 0.582640962 iYCL037C iYCL038C iYCL037C iYCL038C TRUE FALSE PMTR ORF Protein Synthesis translation "associated with ribosomes, has a potential role in translational accuracy, member of a subfamily of La motif proteins" Ion HomeoTXN cytoskeleton actin filament organization YLR289W GUF1 HAND "No Fragment, Hand Selected" 0.6 13% 0.439647128 0.552637623 0.827774579 0.695478749 0.701298701 0.481822227 iYLR288C iYLR288C iYLR289W iYLR289W FALSE FALSE Protein Synthesis translation similarity to E. coli elongation factor-type GTP-binding protein LepA ", PROT SYN" unknown GTPase; similar to E. coli LepA ITM(CAU)J1 tRNA "ORF only Selected, Added 11-12-00, tRNA" 0.939603142 0.87415968 0.572799871 iYJL029C YJL028W iYJL029C FALSE FALSE ORF Protein Synthesis tRNA Unclassified ITA(AGC)D tRNA "ORF only Selected, Added 11-12-00, tRNA" 0.97702593 0.862300561 0.500402836 iYDL024C YDL023C iYDL024C FALSE FALSE ORF Protein Synthesis tRNA Unclassified YDR037W KRS1 PMTR PMTR and ORF Selected 18.2 93% 0.943503862 0.798098614 0.98692732 0.646064835 0.255800726 0.196660482 iYDR036C iYDR036C iYDR037W iYDR037W TRUE FALSE PMTR ORF Protein Synthesis tRNA metabolism "Lysyl-tRNA synthetase, cytoplasmic" "Cellular Organization, PROT SYN" protein synthesis "tRNA synthetase, lysyl" YFL022C FRS2 PMTR PMTR only Selected 10 86% 0.848191633 0.53506847 0.990286547 0.651819373 0.286136432 0.175848996 iYFL022C iYFL023W iYFL022C iYFL023W TRUE FALSE PMTR Protein Synthesis tRNA metabolism "Phenylalanyl-tRNA synthetase, beta subunit, cytoplasmic" "Cellular Organization, PROT SYN" protein synthesis "tRNA synthetase, phenylalanyl" YAL033W POP5 PMTR PMTR and ORF Selected 4.7 74% 0.956388282 0.754834032 0.992893737 0.880105619 0.673907677 0.342059058 iYAL034C iYAL034C iYAL033W iYAL033W TRUE FALSE PMTR ORF Protein Synthesis tRNA metabolism "Subunit of both RNase P and RNase MRP, which are involved in tRNA processing and 5.8S rRNA processing, respectively" "Cellular Organization, rRNA tRNATXN" tRNA processing RNase P and RNase MRP subunit YER168C CCA1 PMTR "PMTR and ORF Selected, ORF had High Control" 1.1 30% 0.950615115 0.94574399 0.941527414 0.814353435 0.062031137 0.444347407 iYER168C iYER167W iYER168C iYER167W TRUE FALSE PMTR ORF Protein Synthesis tRNA metabolism "tRNA nucleotidyltransferase (tRNA CCA-pyrophosphorylase), carries out addition of CCA to 3' end without a template" Cellular OrganizationtRNATXN tRNA processing tRNA nucleotidyltransferase YDL033C YDL033C HAND PMTR "ORF and UTR Selected, Added 11-9-00" Likely PMTR for DBP10 0.5 10% 0.938419487 0.373075274 0.96482711 0.250463822 zzOverlaps ORF iYDL034W YDL032W iYDL034W FALSE FALSE ORF UTR Protein Synthesis tRNA metabolism similarity to H. influenzae protein HI0174 Unclassified tRNA Methyltransferase YIR015W RPR2 ORF ORF and UTR Selected 0.961746963 0.183209041 0.907458039 0.954281725 0.444647897 0.127853513 iYIR014W iYIR014W iYIR015W iYIR015W FALSE FALSE ORF UTR Protein Synthesis tRNA metabolism "Subunit of RNase P, which is responsible for pre-tRNA processing, sole protein subunit of RNase P that is not also a subunit of RNase MRP" Cellular OrganizationtRNATXN tRNA processing RNase P subunit YJL026W RNR2 PMTR PMTR and ORF Selected 15.4 91% 0.932544145 0.84851477 0.954392896 0.611654638 0.496996626 0.204511242 iYJL027C iYJL027C iYJL026W iYJL026W TRUE FALSE PMTR ORF Shared intergenic with suspected target "Component of ribonucleotide reductase (ribonucleoside-diphosphate reductase) small subunit, which is comprised of an Rnr2p-Rnr4p heterodimer" Cellular OrganizationCell GrowthMetabolism DNA replication ribonucleotide reductase YCL036W YCL036W PMTR "PMTR and ORF Selected, Added 11-12-00" Shared Promoter with SRO9 11 88% 0.977096742 0.320662768 0.960346205 0.471622051 0.151642208 0.198884758 iYCL037C iYCL037C iYCL036W iYCL036W TRUE FALSE PMTR ORF Shared intergenic with suspected target unknown function Unclassified YER031C YPT31 PMTR PMTR and ORF Selected 7.8 83% 0.982644965 0.844630672 0.969337599 0.878485034 0.112043236 0.136180367 iYER031C iYER030W iYER031C iYER030W TRUE FALSE PMTR ORF Shared intergenic with suspected target "GTP-binding protein required in the secretory pathway at the stage of formation of trans-Golgi vesicles, member of the rab family in the ras superfamily of small GTP-binding proteins" Cellular OrganizationIntra Transport secretion rab GTPase; intra-Golgi YEL036C ANP1 PMTR "PMTR only Selected, Added 11-12-00" Shared Promoter with HYP2 6.7 81% 0.765967132 0.940501863 0.641219162 0.175717048 0.571347907 iYEL036C iYEL037C iYEL036C iYEL037C TRUE FALSE PMTR Shared intergenic with suspected target "cis Golgi with a role in retention of glycosyltransferases in the Golgi, subunit of Anp1p-Hoc1p-Mnn11p-Mnn9p mannosyltransferase complex" Cellular OrganizationProt Dist YMR015C ERG5 PMTR "PMTR only Selected, Added 11-12-00" May Be Due to Selection of SNR72-78 6.3 79% 0.919660862 0.907961604 0.969506711 0.900904734 0.216818892 0.205887491 iYMR015C iYMR014W iYMR015C iYMR014W TRUE FALSE PMTR Shared intergenic with suspected target Cytochrome P450 Cell DeathCellular OrganizationMetabolism sterol metabolism C-22 sterol desaturase YDR324C YDR324C PMTR PMTR and ORF Selected 6.1 79% 0.924212222 0.321368073 0.98405641 0.611391736 0.604979053 0.757838917 iYDR324C iYDR323C iYDR324C iYDR323C TRUE FALSE PMTR ORF Shared intergenic with suspected target multiple WD40 repeats Unclassified unknown unknown; similar to G-protein beta subunits YPL226W NEW1 PMTR PMTR only Selected 4.9 75% 0.742587391 0.31141261 0.955560952 0.570060886 0.323463687 0.586831604 iYPL227C iYPL227C iYPL226W iYPL226W TRUE FALSE PMTR Shared intergenic with suspected target Member of the non-transporter group of the ATP-binding cassette (ABC) superfamily ", PROT SYNTransport" unknown unknown; similar to members of the ATP-binding cassette (AC) yor125c CAT5 ORF "ORF and UTR Selected, Addded 11-9-00 (correction)" 3' UTR is PMTR for UBP2 4 70% 0.982203059 0.743637037 0.982807296 0.502274722 0.775856045 iYOR125C iYOR124C iYOR125C iYOR124C FALSE FALSE ORF UTR Shared intergenic with suspected target derepression of gluconeogenic enzymes and for coenzyme Q (ubiquinone) biosynthesis Cellular OrganizationMetabolism YKL175W YKL175W PMTR "PMTR and ORF Selected, Added 11-12-00" In a focus with STE3 3.3 65% 0.939155006 0.708414555 0.983139099 0.744515994 0.093216281 0.158014121 iYKL176C iYKL176C iYKL175W iYKL175W TRUE FALSE PMTR ORF Shared intergenic with suspected target Vacuolar membrane the regulation of zinc storage Unclassified YFL023W YFL023W PMTR PMTR only Selected 2.6 57% 0.719362705 0.262487915 0.922211429 0.651819373 0.001949318 0.175848996 iYFL024C iYFL024C iYFL023W iYFL023W TRUE FALSE PMTR Shared intergenic with suspected target unknown function Unclassified unknown unknown YBL021C HAP3 PMTR "PMTR and ORF and UTR Selected, ORF had High Control" 2.1 51% 0.987050693 0.928687459 0.951460901 0.99363863 0.56473133 0.663568773 iYBL021C iYBL022C iYBL021C iYBL022C TRUE FALSE PMTR ORF UTR Shared intergenic with suspected target "Component (with Hap2p, Hap4p, and Hap5p) of heterotrimeric CCAAT-binding factor" Cellular OrganizationTXNmRNA TXN transcription component of heterotrimeric CCAAT-binding factor YKL176C YKL176C PMTR "PMTR and ORF and UTR Selected, Added 11-12-00" In a focus with STE3 2 50% 0.92419664 0.798983625 0.983139099 0.944211113 0.093216281 0.322774529 iYKL176C iYKL177W iYKL176C iYKL177W TRUE FALSE PMTR ORF UTR Shared intergenic with suspected target unknown function Unclassified YMR014W YMR014W PMTR "PMTR and ORF Selected, Added 11-12-00" May Be Due to Selection of SNR72-78 1.8 46% 0.963966986 0.29202666 0.987984505 0.987123058 0.900904734 0.107891179 0.264872871 0.205887491 iYMR013C-0 iYMR013C-1 iYMR013C-1 iYMR014W iYMR014W TRUE TRUE PMTR ORF Shared intergenic with suspected target "unknown function, has possible coiled-coil domain" Unclassified YER169W RPH1 PMTR PMTR only Selected 1.8 46% 0.617762436 0.384386078 0.941527414 0.398959587 0.062031137 0.172736062 iYER168C iYER168C iYER169W iYER169W TRUE FALSE PMTR Shared intergenic with suspected target "DNA damage-responsive repressor of PHR1, has two C2H2-type zinc finger domains" TXNmRNA TXN DNA repair transcriptional repressor of PHR1 YLR390W ECM19 PMTR "PMTR and ORF and UTR Selected, Added 11-10-00" Likely Promoter for STE23 1.6 43% 0.980327857 0.961941516 0.993001604 0.709795322 0.691845635 iYLR389C iYLR389C iYLR390W iYLR390W TRUE FALSE PMTR ORF UTR Shared intergenic with suspected target Protein possibly involved in cell wall structure or biosynthesis Cell Bio YFL021W GAT1 PMTR PMTR only Selected 1.4 39% 0.794979796 0.24820431 0.990286547 0.329284416 0.286136432 0.342875656 iYFL022C iYFL022C iYFL021W-0 iYFL021W-0 TRUE FALSE PMTR Shared intergenic with suspected target "GATA zinc finger transcription factor that plays a supplemental role to Gln3p, activating genes needed to use non-preferred nitrogen sources" Cellular OrganizationMetabolismTXNmRNA TXN nitrogen catabolism transcription factor YMR013C SEC59 PMTR "PMTR and ORF Selected, Added 11-12-00" May Be Due to Selection of SNR72-78 1.1 30% 0.988382946 0.987984505 0.987123058 0.622166191 0.107891179 0.264872871 0.588581136 iYMR013C-0 iYMR013C-1 iYMR012W iYMR013C-0 iYMR012W TRUE TRUE PMTR ORF Shared intergenic with suspected target "Dolichol kinase, mutants accumulate incompletely glycosylated protein precursors in ER" Cellular OrganizationCell GrowthMetabolism YOL060C AMI3 PMTR PMTR only Selected 1.1 30% 0.857125278 0.097969707 0.995398953 0.857555655 0.633863031 0.350064454 iYOL060C iYOL061W iYOL060C iYOL061W TRUE FALSE PMTR Shared intergenic with suspected target required for normal mitochondrial structure Unclassified mitochondrial morphology (putative) unknown YJL029C VPS53 PMTR "PMTR only Selected, Added 11-12-00" "In a focus with RNR2, RRN7, and tRNA" 1.1 30% 0.730630518 0.87415968 0.939603142 0.817706106 0.572799871 0.589360587 0.381825694 iYJL029C itM(CAU)J1 iYJL030W iYJL029C iYJL030W FALSE TRUE PMTR Shared intergenic with suspected target "Subunit of Vps52p-Vps53p-Vps54p complex, involved in protein sorting in the late Golgi" Cellular OrganizationIntra Transport YDR393W SHE9 PMTR PMTR only Selected 1 27% 0.635145034 0.957023061 0.98510363 0.844271812 0.204109812 0.647347077 iYDR392W iYDR392W iYDR393W iYDR393W TRUE FALSE PMTR Shared intergenic with suspected target "similarity to Arabidopsis thaliana CIP1, causes lethality when overexpressed" Unclassified unknown unknown YEL023C YEL023C PMTR "PMTR only Selected, ORF >0.9 but <.92" 0.9 24% 0.907680252 0.588775179 0.986360315 0.852785673 0.809018356 0.720922677 iYEL023C iYEL024W iYEL023C iYEL024W TRUE FALSE PMTR Shared intergenic with suspected target unknown function Unclassified unknown unknown YKL151C YKL151C ORF "ORF only Selected, Unexplained ORF" 0.8 20% 0.945973065 0.808628938 0.893278506 0.884347502 0.363860775 0.281359189 iYKL151C iYKL152C iYKL151C iYKL152C FALSE FALSE ORF Shared intergenic with suspected target unknown function Unclassified unknown unknown YCL024W KCC4 HAND "No Fragment, Hand Selected" 0.4 7% 0.512738522 0.362968875 0.889185702 0.416851806 zzOverlaps ORF YCL023C YCL022C YCL023C FALSE FALSE Shared intergenic with suspected target Serine/threonine protein kinase involved in septin organization and cell cycle control Cellular OrganizationCell Growth unknown protein kinase YDR409W YDR409W PMTR PMTR only Selected 0.4 7% 0.552450267 0.41837232 0.9351431 0.581000131 0.625312576 0.219569251 iYDR408C iYDR408C iYDR409W iYDR409W TRUE FALSE PMTR Shared intergenic with suspected target similarity to Nfi1p Cell Growth unknown unknown; similar to Nfi1p YIL055C YIL055C PMTR PMTR only Selected 0.2 1% 0.823714121 0.424660814 0.977418181 0.411202797 0.322336049 0.2959587 iYIL055C iYIL056W iYIL055C iYIL056W TRUE FALSE PMTR Shared intergenic with suspected target unknown function Unclassified unknown unknown YIL054W YIL054W PMTR "PMTR and ORF Selected, Added 11-12-00" Likely Promoter for RHR2 TRUE 0.1 0% 0.964728186 0.879793748 0.977418181 0.886985467 0.322336049 0.303793302 iYIL055C iYIL055C iYIL054W iYIL054W TRUE FALSE PMTR ORF Shared intergenic with suspected target unknown function Unclassified YGL007W YGL007W ORF "ORF only Selected, Added 11-12-00" "Upstm PMA1, PMC1" TRUE 0.978744431 0.336371703 0.757011612 0.903674923 0.143545117 0.737832692 iYGL008C iYGL008C iYGL007W-0 iYGL007W-0 FALSE FALSE ORF Shared intergenic with suspected target unknown functionquestionable ORF Unclassified YGR177C ATF2 ORF "ORF only Selected, Added 11-12-00" Upstm ERG1 0.945740749 0.613824059 0.895390376 0.677692751 0.94795539 iYGR177C YGR176W iYGR177C YGR176W FALSE FALSE ORF Shared intergenic with suspected target Sterol O-acetyltransferaseacetylates certain toxic steroids such as pregnenolone to render them excretable Metabolism YIR014W YIR014W ORF "ORF only Selected, Added 11-9-00" Likely PMTR for RPR2 TRUE 0.939582329 0.892976856 0.746523032 0.907458039 0.634078212 0.444647897 iYIR013C iYIR013C iYIR014W iYIR014W FALSE FALSE ORF Shared intergenic with suspected target unknown function Unclassified YJL028W YJL028W PMTR "PMTR and ORF and UTR Selected, Added 11-12-00" "In a focus with RNR2, RRN7, and tRNA" TRUE 0.969274472 0.304987005 0.87415968 0.939603142 0.980955088 0.572799871 0.589360587 0.139944769 iYJL029C itM(CAU)J1 itM(CAU)J1 iYJL028W iYJL028W FALSE TRUE PMTR ORF UTR Shared intergenic with suspected target unknown function Unclassified YJL027C YJL027C PMTR "PMTR and ORF and UTR Selected, Added 11-12-00" "In a focus with RNR2, RRN7, and tRNA" TRUE 0.952514964 0.35177063 0.954392896 0.980955088 0.496996626 0.139944769 iYJL027C iYJL028W iYJL027C iYJL028W TRUE FALSE PMTR ORF UTR Shared intergenic with suspected target unknown function Unclassified YEL008W YEL008W PMTR "PMTR and ORF and UTR Selected, Added 11-12-00" Shared Promoter with GCN4 TRUE 0.994747846 0.092168869 0.935478602 0.969046063 0.203351955 0.134665367 iYEL009C iYEL009C iYEL008W iYEL008W TRUE FALSE PMTR ORF UTR Shared intergenic with suspected target growth in high salt Unclassified YEL035C UTR5 PMTR "PMTR and ORF and UTR Selected, Added 11-12-00" Shared Promoter with HYP2 TRUE 0.989438072 0.954231369 0.940501863 0.347897638 0.175717048 iYEL035C iYEL036C iYEL035C iYEL036C TRUE FALSE PMTR ORF UTR Shared intergenic with suspected target unknown function Unclassified YFL015C YFL015C PMTR "PMTR and ORF and UTR Selected, Added 11-12-00" Shared Promoter with HSP12 TRUE 0.982384905 0.148463945 0.962757269 0.922973658 0.294028273 0.37600709 iYFL015C iYFL016C iYFL015C iYFL016C TRUE FALSE PMTR ORF UTR Shared intergenic with suspected target unknown function Unclassified YAL034C YAL034C PMTR PMTR and ORF Selected 0.978858214 0.428109713 0.992893737 0.770619338 0.673907677 0.15098292 iYAL034C iYAL034W-A iYAL034C iYAL034W-A TRUE FALSE PMTR ORF Shared intergenic with suspected target unknown function Unclassified unknown unknown YLR390W-A PMTR "PMTR and ORF Selected, Added 11-10-00" Likely Promoter for STE23 0.94678961 0.993001604 0.500175917 0.691845635 0.774860335 iYLR390W YLR397C iYLR397C YLR397C TRUE FALSE PMTR ORF Shared intergenic with suspected target Unclassified YDL169C UGX2 PMTR PMTR only Selected 0.758612089 0.416210119 0.962482739 0.716493142 0.820590583 0.297228794 iYDL169C iYDL170W iYDL169C iYDL170W TRUE FALSE PMTR Shared intergenic with suspected target unknown function Unclassified unknown unknown YNR070W YNR070W PMTR PMTR only Selected 0.651581403 0.485714286 0.971946364 0.883135635 0.561297458 0.896442495 0.27326586 0.822924381 iYNR069C-0 iYNR069C-1 iYNR069C-1 iYNR070W iYNR070W TRUE FALSE PMTR Shared intergenic with suspected target "Probable multidrug resistance the ATP-binding cassette (ABC) family, has similarity to Snq2p, Pdr5p and Candida albicans Cdr1p" Cell DeathTransport unknown unknown; ATP-binding cassette (ABC) family YMR224C MRE11 PMTR "PMTR only Selected, ORF >0.9 but <.92" 0.915907064 0.788273065 0.96405105 0.739633292 0.319285897 0.765654571 iYMR224C iYMR223W iYMR224C iYMR223W TRUE FALSE PMTR Shared intergenic with suspected target Single-stranded endonuclease and double-stranded exonuclease required for double strand break repair and meiotic recombination Cell DeathCell BioCellular OrganizationCell Growth "meiosis, recombination" ds break formation complex subunit YGR192C TDH3 PMTR "PMTR and ORF Selected, ORF had High Control" 188.1 100% 0.941253994 0.981887589 0.92473861 0.889017947 0.592117173 0.869469323 iYGR192C iYGR191W iYGR192C iYGR191W TRUE FALSE PMTR ORF Sugar Metabolism glycolysis "Glyceraldehyde-3-phosphate dehydrogenase 3, converts D-glyceraldehyde 3-phosphate to 1,3-dephosphoglycerate" Cellular OrganizationEnergyMetabolismGlycol glycolysis glyceraldehyde-3-phosphate dehydrogenase 3 YOL086C ADH1 PMTR PMTR only Selected 125.6 99% 0.597234644 0.384756584 0.965460828 0.562652134 0.399209486 0.269416694 iYOL086C iYOL087C iYOL086C iYOL087C TRUE FALSE PMTR Sugar Metabolism Alcohol metabolism "Alcohol dehydrogenase I, cytoplasmic isozyme reducing acetaldehyde to ethanol, regenerating NAD+" Cellular OrganizationEnergyMetabolism glycolysis alcohol dehydrogenase I YLR044C PDC1 PMTR "PMTR only Selected, ORF >0.9 but <.92" 103.2 99% 0.915259139 0.733483725 0.978186951 0.722220869 0.641946191 0.294311956 iYLR044C iYLR043C iYLR044C iYLR043C TRUE FALSE PMTR Sugar Metabolism glycolysis Pyruvate decarboxylase isozyme 1 Cellular OrganizationEnergyMetabolismRespiration glycolysis pyruvate decarboxylase YAL038W CDC19 PMTR PMTR and ORF Selected 101.3 99% 0.938255472 0.744658157 0.845290926 0.947763209 0.748814745 0.825532274 0.179010375 0.730263158 iYAL039C-0 iYAL039C-1 iYAL039C-1 iYAL038W iYAL038W FALSE TRUE PMTR ORF Sugar Metabolism glycolysis "Pyruvate kinase, catalyzes final step in glycolysis" Cellular OrganizationEnergyMetabolismGlycol glycolysis pyruvate kinase YJR009C TDH2 ORF "ORF only Selected, Homolog Also Selected" High Control Homolog Also Selected 98.9 99% 0.93714383 0.8865048 0.440022378 0.374192569 0.590433084 0.541841521 0.866065627 0.549213027 iYJR009C-0 iYJR009C-1 iYJR008W iYJR009C-0 iYJR008W FALSE FALSE ORF Sugar Metabolism glycolysis "Glyceraldehyde-3-phosphate dehydrogenase 2, converts D-glyceraldehyde 3-phosphate to 1,3-dephosphoglycerate" Cellular OrganizationEnergyMetabolismGlycol glycolysis glyceraldehyde-3-phosphate dehydrogenase 2 YIL053W RHR2 HAND "No Fragment, Hand Selected" 84.9 98% 0.909242723 0.687865497 0.886985467 0.782617991 0.303793302 0.580597383 iYIL054W iYIL054W iYIL053W iYIL053W FALSE FALSE Sugar Metabolism glycerol metabolism DL-glycerol phosphate phosphatase Metabolism glycerol metabolism DL-glycerol-3-phosphatase YKL152C GPM1 ORF "ORF only Selected, Unexplained ORF" 64 97% 0.928203959 0.67382949 0.884347502 0.874659625 0.281359189 0.647227637 iYKL152C YKL153W iYKL152C YKL153W FALSE FALSE ORF Sugar Metabolism glycolysis Phosphoglycerate mutase that converts 2-phosphoglycerate to 3-phosphoglycerate in glycolysis Cellular OrganizationEnergyMetabolismGlycol glycolysis phosphoglycerate mutase YDL055C PSA1 PMTR "PMTR only Selected, High ORF Control" 55.8 97% 0.86615605 0.936073424 0.953937151 0.970178413 0.794839287 0.201581028 0.564222826 0.655980002 iYDL055C-0 iYDL055C-1 iYDL056W iYDL055C-0 iYDL056W TRUE TRUE PMTR Sugar Metabolism mannose metabolism Mannose-1-phosphate guanyltransferase; GDP-mannose pyrophosphorylase Cell BioMetabolism mannose metabolism mannose-1-phosphate guanyltransferase YGR254W ENO1 ORF "ORF only Selected, Homolog Also Selected" High Control Homolog Also Selected 48.1 96% 0.94145486 0.831292298 0.731051944 0.860937648 0.718809198 0.482618583 0.286793372 0.173727408 iYGR253C-0 iYGR253C-1 iYGR253C-1 iYGR254W iYGR254W FALSE FALSE ORF Sugar Metabolism glycolysis "Enolase 1 (2-phosphoglycerate dehydratase), converts 2-phospho-D-glycerate to phosphoenolpyruvate in glycolysis" Cellular OrganizationEnergyMetabolismGlycol glycolysis enolase I YMR083W ADH3 PMTR PMTR only Selected 22.2 94% 0.74364452 0.898403831 0.899019639 0.922161626 0.384962052 0.50052432 0.474231159 0.318745632 iYMR082C-0 iYMR082C-1 iYMR082C-1 iYMR083W iYMR083W FALSE TRUE PMTR Sugar Metabolism Alcohol metabolism "Alcohol dehydrogenase III, mitochondrial isozyme, reduces acetaldehyde to ethanol" Cellular OrganizationMetabolism glycolysis "alcohol dehydrogenase III, mitochondrial" YDL022W GPD1 HAND PMTR ORF and UTR Selected 18.7 93% 0.966648954 0.864324847 0.97124243 0.103598882 zzOverlaps ORF YDL023C iYDL022W YDL023C FALSE FALSE ORF UTR Sugar Metabolism glycerol metabolism "Glycerol-3-phosphate dehydrogenase (NAD+), cytoplasmic, involved in glycerol production converting glycerol-3-phosphate and NAD+ to dihydroxyacetone phosphate and NADH" Cell DeathCell CommCellular OrganizationMetabolism glycerol metabolism glycerol-3-phosphate dehydrogenas YOL136C PFK27 PMTR PMTR only Selected 4.5 73% 0.848372013 0.901118099 0.944342485 0.576838557 0.295555376 0.227502216 iYOL136C iYOL137W iYOL136C iYOL137W TRUE FALSE PMTR Sugar Metabolism fructose metabolism "6-Phosphofructose-2-kinase, isozyme 2" Metabolism fructose metabolism 6-phosphofructo-2-kinase YOR344C TYE7 PMTR "PMTR only Selected, Added 11-12-00" 4.5 73% 0.574329487 0.973512779 0.905107682 0.838869608 0.527881041 0.709273521 0.387491265 iYOR344C-0 iYOR344C-1 itM(CAU)O2 iYOR344C-0 itM(CAU)O2 TRUE FALSE PMTR Sugar Metabolism txn factor Basic helix-loop-helix transcription factor that can suppress the Gcr1p requirement for glycolytic gene expression Cellular OrganizationMetabolismTXNmRNA TXN YGL115W SNF4 PMTR "PMTR and ORF Selected, ORF had High Control" 4.1 70% 0.975556114 0.936920223 0.984643384 0.826048243 0.056603774 0.45004834 iYGL116W iYGL116W iYGL115W iYGL115W TRUE FALSE PMTR ORF Sugar Metabolism glucose derepression "derepression of glucose-repressed genes, acts with Snf1p" Cell DeathCellular OrganizationMetabolismTXNmRNA TXN glucose derepression component of Snf1 complex YDL168W SFA1 PMTR PMTR and ORF Selected 3.6 67% 0.941243507 0.359975542 0.962482739 0.746515472 0.820590583 0.478611333 iYDL169C iYDL169C iYDL168W iYDL168W TRUE FALSE PMTR ORF Sugar Metabolism Alcohol metabolism Long-chain alcohol dehydrogenase (ADH) with similarity to mammalian ADH class III Cell DeathMetabolism formaldehyde metabolism long-chain alcohol dehydrogenase YOL059W GPD2 PMTR PMTR only Selected 3.1 63% 0.882457431 0.773716699 0.995398953 0.461416237 0.633863031 0.258046302 iYOL060C iYOL060C iYOL059W iYOL059W TRUE FALSE PMTR Sugar Metabolism glycerol metabolism Glycerol-3-phosphate dehydrogenase (NAD+); involved in glycerol production converting glycerol-3-phosphate and NAD+ to dihydroxyacetone phosphate and NADH Cellular OrganizationMetabolism glycerol metabolism glycerol-3-phosphate dehydrogenase YEL071W DLD3 PMTR PMTR only Selected "PMTR high cntl, but added back on 11-22-00 on basis of CNTL re-amps" 2.8 60% 0.617478746 0.863926576 0.952496383 0.715987017 0.538710491 0.973586769 0.668627135 0.512130886 IYEL072W-0 IYEL072W-1 iYEL072W-1 iYEL071W-0 iYEL071W-0 TRUE FALSE PMTR Sugar Metabolism lactate metabolism D-lactate dehydrogenase unknown similar to D-lactate dehydrogenase Dld1p YGL084C GUP1 PMTR "PMTR only Selected, ORF >0.9 but <.92" 2.1 51% 0.902071485 0.923243921 0.945305622 0.621745635 0.532003192 0.381858896 iYGL084C iYGL085W iYGL084C iYGL085W TRUE FALSE PMTR Sugar Metabolism glycerol metabolism "unknown function, putative glycerol transporter with similarity to Gup2p" Unclassified unknown major facilitator superfamily YJR134C SGM1 PMTR PMTR only Selected 1.4 39% 0.795261499 0.401788592 0.957228679 0.673124849 0.452130275 0.406251228 iYJR134C iYJR133W iYJR134C iYJR133W TRUE FALSE PMTR Sugar Metabolism mannose metabolism "Putative coiled-coil protein, has similarity to Nuf1p, a component of the nucleoskeleton" Unclear unknown; growth on galactose or mannose unknown YNL201C YNL201C PMTR PMTR only Selected 1.1 30% 0.332960232 0.41811652 0.921252686 0.639152357 0.61375792 0.399916109 iYNL201C iYNL202W iYNL201C iYNL202W TRUE FALSE PMTR Sugar Metabolism Gluconeogenis defect in mutant regulation of carbon metabolism Metabolism unknown unknown YDL021W GPM2 PMTR PMTR and ORF Selected 0.3 3% 0.936374333 0.591620112 0.944144079 0.863119132 0.775775529 0.835053029 iYDL022W iYDL022W iYDL021W iYDL021W TRUE FALSE PMTR ORF Sugar Metabolism glycolysis "Phosphoglycerate mutase, with similarity to Gpm1p and Gpm3p" EnergyMetabolismGlycol glycolysis phosphoglycerate mutase YJL089W SIP4 PMTR PMTR only Selected 0.857653812 0.72417154 0.975509344 0.336039889 0.577893057 0.14022398 iYJL090C iYJL090C iYJL089W iYJL089W TRUE FALSE PMTR Sugar Metabolism glucose derepression "Transcriptional activator of gluconeogenic genes through CSRE elements; activated by Snf1p kinase, possesses a Zn[2]-Cys[6] fungal-type binuclear cluster domain" Cellular OrganizationTXNmRNA TXN glucose derepression transcription factor YPL189W GUP2 PMTR PMTR only Selected TRUE 0.867419014 0.362760185 0.933818228 0.614259124 0.302875244 0.296009577 iYPL190C iYPL190C iYPL189W iYPL189W TRUE FALSE PMTR Sugar Metabolism glycerol metabolism Putative glycerol transporter involved in active glycerol uptake Unclassified unknown major facilitator superfamily YPL017C YPL017C PMTR PMTR and ORF Selected 0.94614079 0.472783536 0.983360545 0.776913544 0.179478906 0.522389321 iYPL017C YPL018W iYPL017C YPL018W TRUE FALSE PMTR ORF Sugar Metabolism glycolysis similarity to Lpd1p Metabolism unknown unknown; similar to Lpd1p YHR096C HXT5 PMTR PMTR only Selected 0.780498685 0.459466 0.97512235 0.845416903 0.563564552 0.669898672 iYHR096C iYHR095W iYHR096C iYHR095W TRUE FALSE PMTR Sugar Metabolism transport member of the hexose transporter family of the major facilitator superfamily (MFS) Cellular OrganizationIntra TransportMetabolismTransport transport hexose permease YOR359W YOR359W PMTR PMTR only Selected TRUE 3.7 68% 0.726474392 0.306624102 0.930468764 0.68774864 0.325025346 0.549411668 iYOR358W iYOR358W iYOR359W iYOR359W TRUE FALSE PMTR Suspect ORF unknown function Unclassified unknown unknown YLR104W YLR104W PMTR "PMTR and ORF and UTR Selected, Added 11-12-00" TRUE 3 62% 0.961597792 0.342994807 0.976071294 0.926156786 0.71124718 0.282810357 iYLR103C iYLR103C iYLR104W iYLR104W TRUE FALSE PMTR ORF UTR Suspect ORF unknown function Unclassified ylr437c YLR437C PMTR "PMTR only Selected, ORF >0.9 but <.92" TRUE 2.9 61% 0.919657581 0.118250752 0.969247087 0.743092539 0.169567421 0.12803423 iYLR437C iYLR436C iYLR437C iYLR436C TRUE FALSE PMTR Suspect ORF unknown function Unclassified unknown unknown YER046W YER046W PMTR PMTR only Selected TRUE 2 50% 0.735869296 0.612945493 0.939890272 0.95689995 0.464995697 0.762335248 0.764644852 0.158925983 iYER045C-0 iYER045C-1 iYER045C-1 iYER046W iYER046W TRUE TRUE PMTR Suspect ORF unknown function Unclassified unknown unknown YNL326C YNL326C ORF "ORF only Selected, New Target" TRUE 1.7 45% 0.982782833 0.066387367 0.52948983 0.32487553 0.286062378 0.08780052 iYNL326C iYNL327W iYNL326C iYNL327W FALSE FALSE ORF Suspect ORF similarity to Akr1p and Ydr126p Unclassified unknown unknown; similar to Akr1p and Ydr126p YPL162C YPL162C PMTR PMTR and ORF Selected TRUE 0.8 20% 0.979287923 0.337638077 0.972644233 0.873184532 0.027909978 0.24285013 iYPL162C iYPL163C iYPL162C iYPL163C TRUE FALSE PMTR ORF Suspect ORF "unknown function, putative membrane protein" Unclassified unknown unknown YLR112W YLR112W ORF "ORF only Selected, Added 11-12-00" TRUE 0.7 17% 0.971742846 0.762180552 0.876157816 0.776586565 0.182866823 0.20609088 iYLR111W iYLR111W iYLR112W iYLR112W FALSE FALSE ORF Suspect ORF unknown function Unclassified YEL057C YEL057C PMTR PMTR only Selected TRUE 0.6 13% 0.798063324 0.65387071 0.959510459 0.719757382 0.8471668 0.608619094 iYEL057C iYEL058W iYEL057C iYEL058W TRUE FALSE PMTR Suspect ORF unknown function Unclassified unknown unknown YDR042C YDR042C HAND "No Fragment, Hand Selected" TRUE 0.3 3% 0.724229711 0.377473562 0.676127926 0.755058864 0.852753765 0.027050182 0.194892259 0.768153153 iYDR042C SNR47 iYDR041W iYDR042C iYDR041W FALSE FALSE Suspect ORF unknown function Unclassified unknown unknown YCR006C YCR006C PMTR "No Fragment, Hand Selected, Added 11-10-00" TRUE 0.2 1% 0.604994579 0.868339831 0.602675328 0.668327344 0.347548254 0.654030327 0.282320056 0.309055752 iYCR006C tP(AGG)C iYCR005C iYCR006C iYCR005C FALSE FALSE Suspect ORF unknown function Unclassified YGL074C YGL074C ORF ORF and UTR Selected TRUE 0.968592774 0.485412299 0.963078365 0.341893781 zzOverlaps ORF iYGL075C YGL073W iYGL075C FALSE FALSE ORF UTR Suspect ORF unknown function Unclassified unknown unknown YKL031W YKL031W ORF "ORF only Selected, IRX1 Downstrm" TRUE 0.973206695 0.124002304 0.899806076 0.740453851 0.165685246 0.348603352 iYKL032C iYKL032C YKL030W YKL030W FALSE FALSE ORF Suspect ORF unknown function Unclassified unknown unknown YLR111W YLR111W ORF "ORF only Selected, New Target" TRUE 0.963283828 0.491620112 0.910306302 0.876157816 0.321599115 0.182866823 iYLR110C iYLR110C iYLR111W iYLR111W FALSE FALSE ORF Suspect ORF unknown function Unclassified unknown unknown YCR025C YCR025C PMTR PMTR and ORF and UTR Selected TRUE 0.995238557 0.609260305 0.978338989 0.977070121 0.559378021 0.373104549 iYCR025C iYCR024C-A iYCR025C iYCR024C-A TRUE FALSE PMTR ORF UTR Suspect ORF unknown function Unclassified unknown unknown YLR400W YLR400W PMTR "PMTR and ORF and UTR Selected, Added 11-12-00" TRUE 0.998561625 0.487596087 0.999391224 0.990815261 0.951762523 0.42796466 iYLR399C iYLR399C iYLR400W iYLR400W TRUE FALSE PMTR ORF UTR Suspect ORF unknown function Unclassified YLR402W YLR402W PMTR "PMTR and ORF and UTR Selected, Added 11-12-00" TRUE 0.983666164 0.511494716 0.984731152 0.970000438 0.352665968 0.538356054 iYLR401C iYLR401C iYLR402W iYLR402W TRUE FALSE PMTR ORF UTR Suspect ORF unknown function Unclassified YCR103C YCR103C PMTR PMTR and ORF Selected TRUE 0.937157814 0.871418588 0.944820843 0.863983494 0.759135275 0.627853152 iYCR103C iYCR102W-A iYCR103C iYCR102W-A TRUE FALSE PMTR ORF Suspect ORF unknown function unknown unknown YHL045W YHL045W PMTR PMTR and ORF Selected TRUE 0.935282198 0.526667741 0.940629956 0.376880395 0.389762404 0.54850145 iYHL046C iYHL046C iYHL045W iYHL045W TRUE FALSE PMTR ORF Suspect ORF unknown function Unclassified unknown unknown YOR343C YOR343C PMTR "PMTR and ORF Selected, Added 11-12-00" TRUE 0.963895008 0.350789558 0.954845195 0.759095889 0.913426985 0.31372865 0.332162809 0.32580463 iYOR343C YORWdelta22 iYOR342C iYOR343C iYOR342C TRUE FALSE PMTR ORF Suspect ORF unknown function Unclassified YLR255C YLR255C PMTR "PMTR and ORF Selected, Added 11-12-00" TRUE 0.956141784 0.117400419 0.923474956 0.273924194 0.12901318 0.011530398 iYLR255C iYLR254C iYLR255C iYLR254C TRUE FALSE PMTR ORF Suspect ORF unknown function Unclassified YOL109W ZEO1 PMTR PMTR and ORF Selected 98.9 99% 0.94145371 0.776467505 0.9641438 0.460412917 0.019632881 0.073315231 iYOL110W iYOL110W iYOL109W iYOL109W TRUE FALSE PMTR ORF Unknown Function leads to resistance to zeocin when overproduced Unclear zeocin resistance unknown YDR276C SNA1 PMTR PMTR and ORF Selected 59.6 97% 0.954511326 0.540926685 0.967036926 0.835592943 0.829424833 0.087093136 iYDR276C iYDR275W iYDR276C iYDR275W TRUE FALSE PMTR ORF Unknown Function "Small, abundant plasma membrane proteolipid protein, has similarity to stress-induced proteins" Unclear unknown unknown YNL190W YNL190W PMTR PMTR only Selected 13.3 89% 0.344045881 0.388011602 0.927923003 0.824111202 0.759259259 0.668868837 iYNL191W iYNL191W iYNL190W iYNL190W TRUE FALSE PMTR Unknown Function unknown function Unclassified unknown unknown YOR355W GDS1 PMTR PMTR only Selected 11.1 88% 0.571358977 0.519094289 0.925420027 0.965657265 0.326203986 0.610055866 0.242568228 0.22731306 iYOR354C-0 iYOR354C-1 iYOR354C-1 iYOR355W iYOR355W TRUE TRUE PMTR Unknown Function "suppresses nam9-1 glycerol deficient phenotype when overexpressed, involved in nuclear control of mitochondria" Unclear respiration (putative) unknown; suppresses nam9-1 YNL010W YNL010W PMTR PMTR and ORF Selected 9.8 86% 0.943292522 0.894813261 0.967623943 0.832994307 0.422117996 0.767053402 iYNL011C iYNL011C iYNL010W iYNL010W TRUE FALSE PMTR ORF Unknown Function unknown function Unclassified unknown unknown YLR003C YLR003C ORF "ORF only Selected, Unexplained ORF" 5 75% 0.963725004 0.714769702 0.756237791 0.814753175 0.166290682 0.23575419 iYLR003C iYLR002C iYLR003C iYLR002C FALSE FALSE ORF Unknown Function unknown function Unclassified unknown unknown YBL081W YBL081W PMTR "PMTR only Selected, Added 11-10-00" TRUE 4.8 74% 0.610097275 0.228948288 0.939385673 0.817830924 0.454851983 0.294287411 iYBL082C iYBL082C iYBL081W iYBL081W TRUE FALSE PMTR Unknown Function 37% identity to Drosophila l (2)not protein Unclassified YGR283C YGR283C PMTR PMTR and ORF Selected 4.6 73% 0.959815268 0.721879371 0.949954929 0.642093416 0.484324237 0.560259511 iYGR283C iYGR282C iYGR283C iYGR282C TRUE FALSE PMTR ORF Unknown Function unknown function Unclassified unknown unknown YNL288W YNL288W PMTR PMTR and ORF Selected 3.6 67% 0.963832758 0.823586352 0.957784362 0.990701204 0.51325635 0.588219885 0.749294184 0.091020266 iYNL289W-0 iYNL289W-1 iYNL289W-1 iYNL288W iYNL288W TRUE TRUE PMTR ORF Unknown Function unknown function Unclassified unknown unknown YPL144W YPL144W PMTR "PMTR and ORF and UTR Selected, Real Target may be sNR17B" 3.5 67% 0.933625264 0.60622506 0.976723293 0.933625264 0.202117888 0.60622506 iYPL145C iYPL145C YPL144W YPL144W TRUE FALSE PMTR ORF UTR Unknown Function YMR099C YMR099C PMTR "PMTR only Selected, ORF >0.9 but <.92" 3.4 66% 0.909520035 0.867916999 0.941633151 0.46574901 0.461303284 0.38823909 iYMR099C itD(GUC)M iYMR099C itD(GUC)M TRUE FALSE PMTR Unknown Function unknown function Unclear unknown unknown ylr401c YLR401C PMTR "PMTR and ORF and UTR Selected, PMTR, ORF, and 3'UTR Selected" 3.2 64% 0.98731847 0.648284118 0.984731152 0.990815261 0.352665968 0.42796466 iYLR401C iYLR400W iYLR401C iYLR400W TRUE FALSE PMTR ORF UTR Unknown Function weak similarity to R. capsulatus protein nifR3 Unclassified unknown unknown; similar to R. capsulatus protein nifR3 YOR161C YOR161C PMTR PMTR only Selected 2.7 58% 0.448973732 0.435197702 0.973227566 0.701216114 0.308966862 0.579756776 iYOR161C iYOR160W iYOR161C iYOR160W TRUE FALSE PMTR Unknown Function unknown function Unclassified unknown unknown ymr266w YMR266W PMTR PMTR only Selected 2.6 57% 0.528759751 0.306014976 0.927593903 0.360188419 0.688798495 0.358473824 iYMR265C iYMR265C iYMR266W iYMR266W TRUE FALSE PMTR Unknown Function Possible membrane transporter involved in tunicamycin sensitivity Unclassified unknown unknown YDR186C YDR186C PMTR PMTR only Selected 2.5 56% 0.861345206 0.613924036 0.966076436 0.715402651 0.005619232 0.541581511 iYDR186C iYDR185C iYDR186C iYDR185C TRUE FALSE PMTR Unknown Function unknown function Unclassified unknown unknown YIR016W YIR016W PMTR "PMTR only Selected, Added 11-13-00" Likely 3'UTR for RPR2 2.1 51% 0.911587768 0.806865828 0.954281725 0.622994647 0.127853513 0 iYIR015W iYIR015W iYIR016W iYIR016W TRUE FALSE PMTR Unknown Function unknown function Unclassified YOR354C YOR354C PMTR PMTR only Selected 2 50% 0.576437806 0.395176252 0.925420027 0.965657265 0.087524257 0.610055866 0.242568228 0.141475991 iYOR354C-0 iYOR354C-1 iYOR353C iYOR354C-0 iYOR353C TRUE TRUE PMTR Unknown Function unknown function Unclassified unknown unknown YNL101W YNL101W PMTR "PMTR only Selected, ORF >0.9 but <.92" 1.9 48% 0.900978161 0.720649895 0.97040561 0.119107191 0.782934255 0.111572227 iYNL102W iYNL102W iYNL101W iYNL101W TRUE FALSE PMTR Unknown Function Putative membrane transporter of the amino acid/auxin permease (AAAP) family Unclassified unknown unknown; similar to members of a putative transporter family YGR284C YGR284C ORF ORF and UTR Selected 1.8 46% 0.943936635 0.842784545 0.611544336 0.949954929 0.412529928 0.484324237 iYGR284C iYGR283C iYGR284C iYGR283C FALSE FALSE ORF UTR Unknown Function similarity to mouse Surf-4 protein Unclassified unknown unknown; similar to mouse Surf-4 protein PIR:A34727 YPL095C YPL095C PMTR PMTR only Selected 1.7 45% 0.703586411 0.743495611 0.943159177 0.043684413 0.717556607 0.036658073 iYPL095C YPL096W iYPL095C YPL096W TRUE FALSE PMTR Unknown Function similarity to Ybr177p Unclassified unknown unknown; similar to Ybr177p YML088W YML088W PMTR PMTR only Selected 1.6 43% 0.485045286 0.665564249 0.961832185 0.876007433 0.887749783 0.630746288 iYML089C iYML089C iYML088W iYML088W TRUE FALSE PMTR Unknown Function "unknown function, contains an F-box" Unclassified unknown unknown YKL039W PTM1 PMTR PMTR only Selected 1.5 41% 0.881486736 0.808113223 0.956349534 0.396154798 0.622085355 0.486248781 iYKL040C iYKL040C iYKL039W iYKL039W TRUE FALSE PMTR Unknown Function "possibly involved in the TCA cycle, has strong similarity to Yhl017p" Unclear unknown "unknown; similar to Yhl017p, member of the major facilitator superfamily" YOR367W SCP1 PMTR PMTR and ORF Selected 1.4 39% 0.932389451 0.57462091 0.947148708 0.813103391 0.643291653 0.542458101 iYOR366W iYOR366W iYOR367W iYOR367W TRUE FALSE PMTR ORF Unknown Function similarity to chicken calponin Cell Bio cytoskeleton (putative) calponin homolog YHR122W YHR122W PMTR "PMTR and ORF Selected, Added 11-12-00" 1.4 39% 0.953746219 0.699281724 0.950960688 0.89508803 0.095922677 0.815202587 iYHR121W iYHR121W iYHR122W iYHR122W TRUE FALSE PMTR ORF Unknown Function unknown function Unclassified YNL254C YNL254C PMTR PMTR only Selected 1.4 39% 0.959562311 0.381713893 0.669432807 0.217478053 iYNL254C iYNL255C iYNL254C iYNL255C TRUE FALSE PMTR Unknown Function unknown function Unclassified unknown unknown YER034W YER034W PMTR PMTR and ORF Selected 1.2 33% 0.949420466 0.716448614 0.926078538 0.316519185 0.129172674 0.023064645 iYER033C iYER033C iYER034W iYER034W TRUE FALSE PMTR ORF Unknown Function unknown function Unclassified unknown unknown YER045C YER045C PMTR PMTR only Selected 1.1 30% 0.190531142 0.135721248 0.939890272 0.95689995 0.14346372 0.762335248 0.764644852 0.258853151 iYER045C-0 iYER045C-1 iYER044C-A iYER045C-0 iYER044C-A TRUE TRUE PMTR Unknown Function "unknown function, has a predicted basic leucine zipper (bZIP) DNA-binding domain" Cellular OrganizationUnclassified unknown unknown YNL011C YNL011C PMTR PMTR and ORF Selected 0.9 24% 0.954378715 0.899895136 0.967623943 0.748257151 0.422117996 0.540342939 iYNL011C iYNL012W iYNL011C iYNL012W TRUE FALSE PMTR ORF Unknown Function unknown function Unclassified unknown unknown YOL082W YOL082W PMTR PMTR and ORF Selected 0.8 20% 0.942440834 0.627009085 0.944309535 0.990099477 0.472687801 0.794549266 0.783788174 0.128736192 iYOL083W-0 iYOL083W-1 iYOL083W-1 iYOL082W iYOL082W TRUE TRUE PMTR ORF Unknown Function unknown function Unclassified unknown unknown YNL253W YNL253W PMTR "PMTR only Selected, ORF >0.9 but <.92" 0.8 20% 0.915027189 0.874006441 0.959562311 0.620885096 0.669432807 0.454577219 iYNL254C iYNL254C iYNL253W iYNL253W TRUE FALSE PMTR Unknown Function unknown function Unclassified unknown unknown YPR106W ISR1 PMTR PMTR and ORF Selected 0.7 17% 0.93640857 0.872146487 0.93163198 0.733192919 0.500760392 0.658260176 iYPR105C iYPR105C YPR107C YPR107C TRUE FALSE PMTR ORF Unknown Function Serine-threonine protein kinase involved in staurosporine resistance Unclear staurosporine resistance protein kinase YMR265C YMR265C PMTR PMTR only Selected 0.7 17% 0.681149951 0.534241789 0.927593903 0.781306927 0.688798495 0.453864757 iYMR265C iYMR264W iYMR265C iYMR264W TRUE FALSE PMTR Unknown Function unknown function Unclassified unknown unknown YJL049W YJL049W PMTR PMTR only Selected 0.5 10% 0.839898346 0.438547486 0.935365525 0.666307063 0.396033901 0.09788914 iYJL050W iYJL050W iYJL049W iYJL049W TRUE FALSE PMTR Unknown Function unknown function Unclassified unknown unknown YEL072W YEL072W PMTR PMTR and ORF and UTR Selected 0.2 1% 0.923172033 0.353956602 0.944282165 0.830189082 0.976081333 0.824282952 0.864806001 0.653994898 iYEL073C-0 iYEL073C-1 iYEL073C-4 iYEL072W-0 iYEL073C-4 TRUE FALSE PMTR ORF UTR Unknown Function unknown function Unclassified unknown unknown YKL096W-A CWP2 HAND "No Fragment, Hand Selected" 0.850112387 0.362552369 0.80700764 0.750455267 0.361309965 0.315640881 iYKL097C iYKL097C iYKL097W-A-0 iYKL097W-A-0 FALSE FALSE Unknown Function unknown cell wall protein YLR164W YLR164W HAND "No Fragment, Hand Selected" 0.352609242 0.67260899 0.517843662 0.613687151 0.756664006 0.513815727 iYLR163C iYLR163C iYLR164W iYLR164W FALSE FALSE Unknown Function strong similarity to Sdh4p EnergyMetabolism unknown unknown; similar to Sdh4p YDL186W YDL186W HAND PMTR ORF and UTR Selected 0.970609726 0.403102664 0.984311186 0.749187784 zzOverlaps ORF YDL187C iYDL186W YDL187C FALSE FALSE ORF UTR Unknown Function unknown function Unclassified unknown unknown YGL258W YGL258W PMTR PMTR and ORF Selected 0.932451085 0.858784047 0.932255137 0.98721062 0.173310072 0.451579117 0.23930787 0.049790356 iYGL259W-0 iYGL259W-1 iYGL259W-1 iYGL258W iYGL258W TRUE TRUE PMTR ORF Unknown Function unknown function Unclassified unknown unknown YOR387C YOR387C PMTR PMTR only Selected 0.799294058 0.453632848 0.954936245 0.949414751 0.687262704 0.636312849 0.442936951 0.5063366 iYOR387C-0 iYOR387C-1 iYOR386W iYOR387C-0 iYOR386W TRUE TRUE PMTR Unknown Function unknown function Unclassified unknown unknown YPR030W CSR2 PMTR PMTR only Selected 0.803136886 0.479552374 0.972814298 0.639814356 0.657417117 0.615334633 iYPR029C iYPR029C iYPR030W iYPR030W TRUE FALSE PMTR Unknown Function unknown function Unclassified unknown unknown; multicopy suppressor of chs5 spa2 double mutant YER033C ZRG8 PMTR PMTR only Selected 0.441676117 0.453444496 0.926078538 0.568775501 0.129172674 0.179769392 iYER033C iYER032W iYER033C iYER032W TRUE FALSE PMTR Unknown Function unknown function Unclassified unknown unknown YGL083W SCY1 PMTR PMTR only Selected 0.553860005 0.72048054 0.945305622 0.231814896 0.532003192 0.026496409 iYGL084C iYGL084C iYGL083W iYGL083W TRUE FALSE PMTR Unknown Function suppression of a GTPase mutant Unclassified unknown unknown