Ribosomals	Gene	Overall Selected in Rap1p IP	Overall PMTR selected in Rap1p IP?	Txn Rate	%RNK Txn Rate	Homology?	"ORF Selected? If not, %tile RNK"	ORF CNTL	Promoter 1	"Selected? If not, %tile RNK"	Promoter 1 CNTL	Promoter 2	Selected?	CNTL	Notes #1	ABF1 Site?	RAP1 Binding Site?	Half-life (min)	Abundance (copies/cell)	Txn rate (mRNAs/hr)	Note (Non-Target Ranks)	Desc.
YMR121C	RPL15B	FALSE!	FALSE	2.6	0.5698	"1,YLR029C,93%"	0.904306399	0.829768555	iYMR121C	0.220306073	0.318302815				Hand-Checked	REB1	FALSE	23	1.6	2.6	".06, .22, .21, .13, .67, .51"	"Ribosomal protein L15 (yeast L13YL10rp15Rrat L15), nearly identical to Rpl15Ap"
YDR012W	RPL4B	FALSE!	FALSE	61.8	0.9715	"1,YBR031W,99%"	0.706259641	0.682119649	iYDR011W	0.468295851	0.699898614				Hand-Checked	TRUE	FALSE	14.8	24.7	61.8	".45, .45, NV, .82, 46, .67"	"Ribosomal protein L4 (yeast L2YL2rp2Xenopus L1Drosophila L1rat L4), nearly identical to Rpl4Ap"
YOR167C	RPS28A	FALSE!	FALSE	77.6	0.9778	"1,YLR264W,88%"	0.675310284	0.506953016	iYOR167C	0.663755581	0.375370679				Hand-Checked	TRUE	TRUE	15.5	32.8	77.6	".28, .74, .42, .58, .77, .80"	"Ribosomal protein S28 (yeast S33YS27mammalian S28), nearly identical to Rps28Bp"
YDL081C	RPP1A	FALSE!	FALSE	82	0.9794	"1,YDL130W,72%"	0.783147904	0.391263941	iYDL081C	0.494050821	0.389399357				Hand-Checked	TRUE	FALSE	15	34.2	82	".39, .54, .44, .08, .56, .70"	Acidic ribosomal protein P1A (A1YP1alphaE. coli L12eIIAhuman and rat P1)
YOR063W	RPL3	FALSE!	FALSE	97.4	0.9849		0.898423962	0.918868837	iYOR062C	0.452407721	0.740143839				Hand-Checked	TRUE	FALSE	14	36.7	97.4	".14, .42, .09, .95, .48, .60"	"Ribosomal protein L3 (YL1rp1rat L3) , responsible for trichodermin resistance and involved in maintenance of dsRNA viruses"
YBR031W	RPL4A	FALSE!	FALSE	113.2	0.9891	"1,YDR012W,99%"	0.878142424	0.956844398	iYBR030W	0.377640571	0.186577398				Hand-Checked	TRUE	FALSE	15	44.6	113.2	".21, .47, .27, .27, .68, .63"	"Ribosomal protein L4 (yeast L2YL2rp2Xenopus L1Drosophila L1rat L4), nearly identical to Rpl4Bp"
YLR367W	RPS22B	FALSE#	FALSE	17.2	0.9202	"2,YJL190C,90%,iSNR44,73%"	TRUE	0.966699155	iYLR366W	0.826921839	0.928208438	SNR44		0.649108655	"Hand-Checked, 5' Fragments Selected, ORF Homology"	TRUE	FALSE	28.8	13.6	17.2	".92, .74, .91, .96, .58, .47"	"RIbosomal protein S22 (yeast S24rp50YS22rat S15A), nearly identical to Rps22Ap"
YLR264W	RPS28B	FALSE#	FALSE	61.5	0.9711	"1,YOR167C,88%"	0.821981686	0.551799441	iYLR263W	0.833141772	0.533979734				"Hand-Checked, 5' Fragments Selected"	TRUE	FALSE	14	24	61.5	".29, .77, .89, .60, .92, .92"	"Ribosomal protein S28 (yeast S33YS27mammalian S28), nearly identical to Rps28Ap"
YHR141C	RPL42B	FALSE#	FALSE	67.2	0.9743	"1,YNL162W,98%"	TRUE	0.976946517	iYHR141C	0.601883986	0.063426911				"Hand-checked, ORF Homology, Upstream ORF selected but high control"		TRUE	13	24.4	67.2	".44, NV, .03, .60, .76, .95"	"Ribosomal protein L42 (yeast L41YL27YP44human and rat L36A), involved in replication of M1 and M2 double-stranded RNA (dsRNA) viruses, identical to Rpl42Ap"
YLR029C	RPL15A	FALSE#	FALSE	70.9	0.9755	"1,YMR121C,93%"	0.914546422	0.934690774	iYLR029C	0.885812264	0.422169811				"Hand-checked, High O CNTL"		TRUE	13	24.1	70.9		"Ribosomal protein L15 (yeast L13YL10rp15Rrat L15), nearly identical to Rpl15Bp"
YOR182C	RPS30B	FALSE#	FALSE	119.4	0.9909	"1,YLR287C-A,95%"	TRUE	0.428700732	iYOR182C	0.820741405	0.42985365				"Hand-checked, High Upstm ORF control"		TRUE	16	51.2	119.4	".77, .83, .81, .33, .95, .94"	"Ribosomal protein S30B (mammalian S30), identical to Rps30Ap"
YDR382W	RPP2B	FALSE#	FALSE	121.5	0.9917	"1,YOL039W,74%,"	TRUE	0.957025846	iYDR381W	0.480458418	0.242656134				"Hand-checked, ORF Homology"	TRUE	FALSE	16	51.2	121.5	".44, .46, .37, .50, .55, .50"	Acidic ribosomal protein P2B (L45YPA1YL44CYP2 betaE. coli L12eIAhuman and rat P2)
YPL081W	RPS9A	TRUE!	TRUE	12.1	0.887	"1,YBR189W,91%"	TRUE	0.836830412	iYPL082C	TRUE	0.128651237	IntYPL081W	TRUE	0.821085747			TRUE	14	4.5	12.1		"Ribosomal protein S9 (yeast S13YS11YP28rp21E. coli S4rat S9), nearly identical to Rps9Bp"
YJL191W	RPS14B	TRUE!	TRUE	14.7	0.9049	"1,YCR031C,92%"	TRUE	0.982391179	iYJL192C	TRUE	0.718175959						TRUE	20	7.9	14.7		"Ribosomal protein S14B (rp59E. coli S11rat and human S14), nearly identical to Rps14Ap"
YGR027C	RPS25A	TRUE!	TRUE	30.7	0.952	"1,YLR333C,92%"	TRUE	0.957983927	iYGR027C	TRUE	0.709417398	YGRCdelta12		0.532872542			TRUE	17	14.4	30.7		"Ribosomal protein S25A (yeast S31YS23rp45rat S25), identical to Rps25Bp"
YLR344W	RPL26A	TRUE!	TRUE	31.2	0.9531	"1,YGR034W,92%"	TRUE	0.907347728	iYLR343W	0.555447343	0.433235867	iYLRCdelta21	TRUE	0.737513371			TRUE	11	9.4	31.2		"Ribosomal protein L26 (yeast L33YL33rat L26), nearly identical to Rpl26Bp"
YPL198W	RPL7B	TRUE!	TRUE	34.3	0.9555	"1,YGL076C,97%,"	0.849048121	0.621924659	iYPL199C	TRUE	0.325401307	SNR59		0.451556265			TRUE	16.5	14.3	34.3		"Ribosomal protein L7 (yeast L6YL8Brp11E. coli L30rat L7), nearly identical to Rpl7Ap"
YER131W	RPS26B	TRUE!	TRUE	36.6	0.9561	"1,YGL189C,92%"	0.91030159	0.830486626	iYER130C	TRUE	0.494533635						TRUE	8	8.4	36.6	only 2 measurements	"Ribosomal protein S26 (rat S26), nearly identical to Rps26Ap"
YML063W	RPS1B	TRUE!	TRUE	37.2	0.9567	"1,YLR441C,92%"	TRUE	0.883822108	iYML064C	TRUE	0.525299282						TRUE	11	11.2	37.2		"Ribosomal protein S1 (rp10rat S3A), nearly identical to Rps1Ap"
YBR048W	RPS11B	TRUE!	TRUE	38.3	0.9579	"1,YDR025W,96%"	TRUE	0.703637977	iYBR047W	TRUE	0.601608187	IntYBR048W		0.55490822			TRUE	16	15	38.3		"Ribosomal protein S11 (yeast S18YS12rp41E. coli S17human and rat S11), identical to Rps11Bp"
YNL067W	RPL9B	TRUE!	TRUE	42.1	0.9604	"1,YGL147C,94%"	TRUE	0.556817247	iYNL068C	TRUE	0.284591195						WEAK	13	14.6	42.1		"Ribosomal protein L9 (YL11rp25rp24E. coli L6rat L9), nearly identical to Rpl9Ap"
YMR242C	RPL20A	TRUE!	TRUE	49	0.9642	"1,YOR312C,90%"	TRUE	0.837488686	iYMR242C	TRUE	0.750080567						WEAK	12	15.4	49		"Ribosomal protein L20, nearly identical to Rpl20Bp"
YHL033C	RPL8A	TRUE!	TRUE	49.6	0.9644	"1,YLL045C,95%"	TRUE	0.939465409	iYHL033C	TRUE	0.345712623						TRUE	15	20	49.6		"Ribosomal protein L8 (yeast L4rp6YL5human, mouse, and rat L7a), involved in maintenance of M1 dsRNA virusnearly identical to Rpl8Bp"
YMR230W	RPS10B	TRUE!	TRUE	50.1	0.9646	"1,YOR293W,93%"	TRUE	0.658415005	iYMR229C	TRUE	0.658949746						TRUE	13	17.5	50.1		"Ribosomal protein S10 (rat S10), nearly identical to Rps10Ap"
YNL096C	RPS7B	TRUE!	TRUE	51.4	0.9654	"1,YOR096W,86%"	TRUE	0.973504484	iYNL096C	TRUE	0.092571705						TRUE	10.5	14.4	51.4		"Ribosomal protein S7 (rp30human S7Xenopus S8), nearly identical to Rps7Ap"
YMR143W	RPS16A	TRUE!	TRUE	52.2	0.9656	"1,YDL083C,89%"	TRUE	0.373663208	iYMR142C	TRUE	0.44408788					TRUE	FALSE	11	15.8	52.2		"Ribosomal protein S16 (rp61Rrat S16), identical to Rps16Bp"
YML073C	RPL6A	TRUE!	TRUE	53.9	0.9666	"1,YLR448W,91%"	TRUE	0.880196584	iYML073C	TRUE	0.673496256						TRUE	13	19.3	53.9		"Ribosomal protein L6 (yeast L17AYL16Ahuman L6), nearly identical to Rpl6Bp"
YGR214W	RPS0A	TRUE!	TRUE	55.3	0.9672	"1,YLR048W,91%"	TRUE	0.976283301	iYGR213C	TRUE	0.395019385						TRUE	11.5	17.1	55.3		"Ribosomal protein S0 (E. coli S2rat Sa), nearly identical to Rps0Bp"
YEL054C	RPL12A	TRUE!	TRUE	57.4	0.9682	"1,YDR418W,92%"	TRUE	0.769005848	iYEL054C	TRUE	0.820175439						TRUE	12	18.6	57.4		"Ribosomal protein L12 (yeast L15YL23E. coli L11rat L12b), identical to Rpl12Bp"
YLR340W	RPP0	TRUE!	TRUE	57.6	0.9683		TRUE			TRUE	12				"Added 11-12-00, ORF and PMTR Selected"		TRUE	16	24.6	57.6		Acidic ribosomal protein A0
YLR048W	RPS0B	TRUE!	TRUE	57.8	0.9687	"1,YGR214W,91%"	TRUE	0.749526866	iYLR047C	TRUE	0.287681649						TRUE	11	16.6	57.8		"Ribosomal protein S0 (E. coli S2rat Sb), nearly identical to Rps0Ap"
YDL061C	RPS29B	TRUE!	TRUE	58.2	0.9689	"1,YLR388W,92%"	0.798890848	0.273686755	iYDL061C	TRUE	0.337988827						TRUE	15	23.4	58.2		"Ribosomal protein S29 (yeast S36YS29rat S29), similar to Rps29Ap"
YER056C-A	RPL34A	TRUE!	TRUE	59	0.9695	"1,YIL052C,92%"	0.906302814	0.61887462	iYER056C-A	TRUE	0.651478233						TRUE	11	17.2	59		"Ribosomal protein L34 (rat L34), nearly identical to Rpl34Bp"
YMR142C	RPL13B	TRUE!	TRUE	59.7	0.9703	"1,YDL082W,93%"	TRUE	0.697812887	iYMR142C	TRUE	0.44408788						TRUE	12	19.4	59.7		"Ribosomal protein L13 (rat L13), nearly identical to Rpl13Ap"
YBL027W	RPL19B	TRUE!	TRUE	60.5	0.9707	"1,YBR084C-A,94%"	TRUE	0.942901235	iYBL028C	TRUE	0.831935709						TRUE	14.5	23.6	60.5		"Ribosomal protein L19 (yeast L23YL14rp15Lrp33rat L19), nearly identical to Rpl19Ap"
YLR333C	RPS25B	TRUE!	TRUE	63.9	0.9727	"1,YGR027C,92%"	TRUE	0.949423248	iYLR333C	TRUE	0.740654206					RAP1?	FALSE	12	20.9	63.9		"Ribosomal protein S25B (yeast S31YS23rp45rat S25), identical to Rps25Ap"
YBR084C-A	RPL19A	TRUE!	TRUE	64.4	0.9733	"1,YBL027W,94%"	TRUE	0.945712672	iYBR084C-A	TRUE	0.377094972						TRUE	14	25.1	64.4		"Ribosomal protein L19 (yeast L23YL14rp15Lrp33rat L19), nearly identical to Rpl19Bp"
YER074W	RPS24A	TRUE!	TRUE	64.7	0.9735	"1,YIL069C,97%"	TRUE	0.68764914	iYER073W	TRUE	0.352095517						TRUE	14	24.5	64.7		"Ribosomal protein S24 (rat S24), identical to Rps24Bp"
YLL045C	RPL8B	TRUE!	TRUE	66	0.9741	"1,YHL033C,95%"	TRUE	0.870816458	IYLL044W	TRUE	0.97889893						TRUE	13	23.5	66		"Ribosomal protein L8 (yeast L4rp6YL5human, rat, and mouse L7a), involved in maintenance of M1 dsRNA virusnearly identical to Rpl8Ap"
YKR094C	RPL40B	TRUE!	TRUE	69	0.9749	"1,YIL148W,94%"	TRUE	0.937546285	iYKR094C	TRUE	0.5581189						TRUE	11.5	21.7	69		"Fusion protein comprised of ribosomal protein L40 (C-terminal half) and ubiquitin (N-terminal half), (rat L40), identical to Rpl40Ap"
YGL076C	RPL7A	TRUE!	TRUE	70.6	0.9753	"1,YPL198W,97%"	TRUE	0.815055762	iYGL076C	TRUE	0.383365822						TRUE	14	26.7	70.6		"Ribosomal protein L7 (yeast L6YL8Arp11E. coli L30rat L7), nearly identical to Rpl7Bp"
YKL156W	RPS27A	TRUE!	TRUE	71	0.9757	"1,YHR021C,84%"	TRUE	0.889560263	iYKL157W	TRUE	0.444038337						TRUE	14	26.6	71		"Ribosomal protein S27 (yeast S27rp61YS20mammalian S27), nearly identical to Rps27Bp"
YJL177W	RPL17B	TRUE!	TRUE	72	0.9764	"1,YKL180W,92%"	TRUE	0.789202433	iYJL178C	TRUE	0.180526736						TRUE	12	23.7	72		"Ribosomal protein L17 (yeast L20YL17E. coli L22rat and human L17), nearly identical to Rpl17Ap"
YOR312C	RPL20B	TRUE!	TRUE	73.7	0.9766	"1,YMR242C,93%"	0.915724961	0.646260183	iYOR312C	TRUE	0.446583951						TRUE	13	25.8	73.7		"Ribosomal protein L20, nearly identical to Rpl20Ap"
YNL069C	RPL16B	TRUE!	TRUE	75.5	0.9772	"1,YIL133C,87%"	TRUE	0.933128983	iYNL069C	TRUE	0.240681313						TRUE	13	27.1	75.5		"Ribosomal protein L16 (rp23), nearly identical to Rpl16Ap"
YBR189W	RPS9B	TRUE!	TRUE	76.2	0.9774	"1,YPL081W,92%"	TRUE	0.888844075	iYBR188C	TRUE	0.827827908						TRUE	12	25.7	76.2		"Ribosomal protein S9 (yeast S13YS11YP28rp21E. coli S4rat S9), nearly identical to Rps9Ap"
YLR448W	RPL6B	TRUE!	TRUE	77.4	0.9776	"1,YML073C,91%"	TRUE	0.894305509	iYLR447C	TRUE	0.705422529						TRUE	12	25	77.4		"Ribosomal protein L6 (yeast L17BYL16Bhuman L6), nearly identical to Rpl6Ap"
YOL127W	RPL25	TRUE!	TRUE	78.5	0.978		TRUE	0.982818424	iYOL128C	TRUE	0.676952193						TRUE	13	28.4	78.5		Ribosomal protein L25 (YL25rp61LE. coli L23rat L23a)
YDR471W	RPL27B	TRUE!	TRUE	79.9	0.9784	"1,YHR010W,90%"	TRUE	0.931707357	iYDR470C	TRUE	0.435859459						TRUE	10	22.1	79.9		"Ribosomal protein L27 (yeast L27mammalian L27), identical to Rpl27Ap"
YPL090C	RPS6A	TRUE!	TRUE	80.9	0.9788	"1,YBR181C,99%"	0.738857503	0.090828426	iYPL090C	TRUE	0.294988892						TRUE	12	27.2	80.9		"Ribosomal protein S6 (yeast S10YS4rp9human, mouse, and rat S6), identical to Rps6Bp"
YJR145C	RPS4A	TRUE!	TRUE	81.2	0.979	"1,YHR203C,98%"	TRUE	0.983954579	iYJR145C	TRUE	0.710817133						TRUE	12	25.5	81.2		"Ribosomal protein S4 (yeast S7YS6rp5rat and human S4), identical to Rps4Bp"
YIL148W	RPL40A	TRUE!	TRUE	82.1	0.9796	"2,YKR094C,94%,YLR167W,75%"	TRUE	0.94868316	iYIL149C	TRUE	0.599821313						TRUE	13.5	30.2	82.1		"Fusion protein comprised of ribosomal protein L40 (C-terminal half) and ubiquitin (N-terminal half) (rat L40), identical to Rpl40Bp"
YDL082W	RPL13A	TRUE!	TRUE	82.6	0.98	"1,YMR142C,93%"	TRUE	0.927508373	iYDL083C	TRUE	0.683603734						TRUE	12	25.9	82.6		"Ribosomal protein L13 (rat L13), nearly identical to Rpl13Bp"
YDL136W	RPL35B	TRUE!	TRUE	82.6	0.98	"1,YDL191W,99%"	TRUE	0.703616352	iYDL137W	TRUE	0.796727853						TRUE	14	32.1	82.6		"Ribosomal protein L35 (rat L35), identical to Rpl35Ap"
YDR064W	RPS13	TRUE!	TRUE	83.7	0.9804		TRUE	0.673779456	iYDR063W	TRUE	0.812769354	IntYDR064W	TRUE	0.821881092			TRUE	12	28.2	83.7		Ribosomal protein S13 (yeast S27YS15rat S13)
YOR096W	RPS7A	TRUE!	TRUE	83.8	0.9806	"1,YNL096C,86%"	TRUE	0.755559136	iYOR095C	TRUE	0.509506929						TRUE	11.5	26.7	83.8		"Ribosomal protein S7 (rp30human S7Xenopus S8), nearly identical to Rps7Bp"
YLR185W	RPL37A	TRUE!	TRUE	85.2	0.9812	"1,YDR500C,91%"	TRUE	0.912020625	iYLR184W	TRUE	0.721714803						TRUE	14	32.1	85.2		"Ribosomal protein L37 (yeast L46rat L37), nearly identical to Rpl37Bp"
YDR447C	RPS17B	TRUE!	TRUE	86.2	0.9816	"1,YML024W,95%"	TRUE	0.970396064	iYDR447C	TRUE	0.633419272						TRUE	15	34.5	86.2		"Ribosomal protein S17 (rp51rat S17), nearly identical to Rpl17Ap"
YBR181C	RPS6B	TRUE!	TRUE	87.2	0.9818	"1,YPL090C,99%"	TRUE	0.839106145	iYBR181C	TRUE	0.532960894						TRUE	14	33.8	87.2		"Ribosomal protein S6 (yeast S10YS4rp9human, mouse, and rat S6), identical to Rps6Ap"
YDR500C	RPL37B	TRUE!	TRUE	87.6	0.982	"1,YLR185W,91%"	TRUE	0.835723493	iYDR500C	TRUE	0.149021663						TRUE	18	41.9	87.6		"Ribosomal protein L37 (yeast L46) (rat L37), nearly identical to Rpl37Bp"
YGL030W	RPL30	TRUE!	TRUE	89.9	0.9826		TRUE	0.959060123	iYGL031C	TRUE	0.815923207						TRUE	15	36.7	89.9		Large-subunit ribosomal protein L30 (yeast L32YL38rp73mouse and rat L30)
YHL001W	RPL14B	TRUE!	TRUE	91.5	0.983	"1,YKL006W,96%"	TRUE	0.968981631	iYHL002W	TRUE	0.266161213						TRUE	14	34.8	91.5		"Ribosomal protein L14 (mammalian L14), nearly identical to Rpl14Ap"
YPR043W	RPL43A	TRUE!	TRUE	92.9	0.9832	"1,YJR094W-A,90%"	TRUE	0.857293697	iYPR042C	TRUE	0.584206848						TRUE	17	42.3	92.9		"Ribosomal protein L43A (human L37A), identical to Rpl43Bp"
YLR441C	RPS1A	TRUE!	TRUE	93.2	0.9834	"1,YML063W,92%"	0	0	iYLR441C	TRUE	0.34002371						TRUE	12.5	31	93.2		"Ribosomal protein S1 (rp10rat S3A), nearly identical to Rps1Bp"
YIL052C	RPL34B	TRUE!	TRUE	93.8	0.9836	"1,YER056C-A,92%"	TRUE	0.959226771	iYIL052C	TRUE	0.415726716						TRUE	14	34.4	93.8		"Ribosomal protein L34 (rat L34), nearly identical to Rpl34Ap"
YOR369C	RPS12	TRUE!	TRUE	94.5	0.9838		0.792336913	0.130364988	iYOR369C	TRUE	0.743089976						TRUE	14	35.6	94.5		Ribosomal protein S12 (rat S12)
YPR102C	RPL11A	TRUE!	TRUE	95	0.984	"1,YGR085C,97%"	TRUE	0.738007076	iYPR102C	TRUE	0.262011173						TRUE	13	34.5	95		"Ribosomal protein L11 (yeast L16YL22rp39AE. coli L5rat L11), nearly identical to Rpl11Bp"
YDR450W	RPS18A	TRUE!	TRUE	95.4	0.9843	"1,YML026C,95%"	TRUE	0.818226121	iYDR449C	TRUE	0.542631282						TRUE	13	33.7	95.4		"Ribosomal protein S18 (E. coli S13rat S18), identical to Rps18Bp"
YNL162W	RPL42A	TRUE!	TRUE	96.2	0.9845	"1,YHR141C,89%"	TRUE	0.891959394	iYNL163C	TRUE	0.86632083						TRUE	12	32.1	96.2		"Ribosomal protein L42 (yeast L41YL27YP44human and rat L36A), identical to Rpl42Bp"
YOL040C	RPS15	TRUE!	TRUE	97.2	0.9847		0.879805142	0.435992579	iYOL040C	TRUE	0.673503591						TRUE	12	30.6	97.2		Ribosomal protein S15 (yeast S21rp52E. coli S19rat S15RIG protein)
YLR061W	RPL22A	TRUE!	TRUE	102.1	0.9857	"1,YFL034C-A,80%"	TRUE	0.613720852	iYLR060W	TRUE	0.548338374						TRUE	14	39	102.1		"Ribosomal protein L22, similar to Rpl22Bp"
YLR388W	RPS29A	TRUE!	TRUE	104.1	0.9863	"1,YDL061C,92%"	0.75531304	0.300501934	iYLR387C	TRUE	0.731923384					RAP1?	FALSE	14	38.2	104.1		"Ribosomal protein S29 (yeast S36YS29rat S29), similar to Rps29Bp"
YHL015W	RPS20	TRUE!	TRUE	104.1	0.9863		TRUE	0.665880503	iYHL016C	TRUE	0.291179337						TRUE	15	42.9	104.1		Ribosomal protein S20 (E. coli S10Xenopus S22rat and human S20)
YDL075W	RPL31A	TRUE!	TRUE	104.4	0.9867	"1,YLR406C,91%"	TRUE	0.614844374	iYDL076C	TRUE	0.106832098						TRUE	16	45.4	104.4		"Ribosomal protein L31 (yeast L34YL36YL28rat L31), nearly identical to Rpl31Bp"
YPL220W	RPL1A	TRUE!	TRUE	106.9	0.9873	"1,YGL135W,99%,"	TRUE	0.946438655	iYPL221W	TRUE	0.377573823						WEAK	16	44.8	106.9		"Large subunit ribosomal protein L1 (rat L10Aeubacterial L1archeal L1), identical to Rpl1Bp"
YOR234C	RPL33B	TRUE!	TRUE	107.8	0.9875	"1,YPL143W,91%"	TRUE	0.87150838	iYOR234C	TRUE	0.38624208	YOR235W	TRUE	0.250625151			TRUE	12.5	36.5	107.8		"Ribosomal protein L33 (yeast L37YL37rp47rat L35A), nearly identical to Rpl33Ap"
YBL092W	RPL32	TRUE!	TRUE	108.5	0.9877		0.888452823	0.586013645	iYBL093C	TRUE	0.655546688						TRUE	13	37	108.5		Ribosomal protein L32
YDL083C	RPS16B	TRUE!	TRUE	109.5	0.9879	"1,YMR143W,89%"	TRUE	0.329418723	iYDL083C	TRUE	0.683603734						TRUE	11	31.2	109.5		"Ribosomal protein S16 (rp61Rrat S16), identical to Rps16Ap"
YKL180W	RPL17A	TRUE!	TRUE	109.7	0.9881	"1,YJL177W,92%"	TRUE	0.921588726	iYKL181W	TRUE	0.69668807						TRUE	11	33.2	109.7		"Ribosomal protein L17 (yeast L20YL17E. coli L22rat and human L17), nearly identical to Rpl17Bp"
YML024W	RPS17A	TRUE!	TRUE	110.7	0.9885	"1,YDR447C,95%"	TRUE	0.90622506	iYML025C	TRUE	0.056465274						TRUE	12	36.4	110.7		"Ribosomal protein S17 (rp51rat S17), nearly identical to Rps17Bp"
YDL191W	RPL35A	TRUE!	TRUE	113.1	0.9889	"1,YDL136W,99%"	TRUE	0.74663225	iYDL192W	TRUE	0.916612955	IntYDL191W	TRUE	0.855607966			TRUE	14	41.2	113.1		"Ribosomal protein L35 (rat L35), identical to Rpl35Bp"
YML026C	RPS18B	TRUE!	TRUE	114.8	0.9893	"1,YDR450W,95%"	TRUE	0.706864564	iYML026C	TRUE	0.694247502						TRUE	9	29.3	114.8		"Ribosomal protein S18 (E. coli S13rat S18), identical to Rps18Ap"
YPL131W	RPL5	TRUE!	TRUE	115.4	0.9895		0.872377716	0.262504224	iYPL132W	TRUE	0.637665968						TRUE	12	37	115.4		"Ribosomal protein L5 (yeast L1YL3rat L5), the sole 5S rRNA-associated ribosomal protein"
YPL143W	RPL33A	TRUE!	TRUE	115.6	0.9897	"1,YOR234C,91%"	TRUE	0.875586275	iYPL144W	TRUE	0	IntYPL143W	TRUE	0.362875972			TRUE	15	45.5	115.6		"Ribosomal protein L33 (yeast L37YL37rp47rat L35A), nearly identical to Rpl33Bp"
YLR287C-A	RPS30A	TRUE!	TRUE	116.6	0.9901	"1,YOR182C,95%"	TRUE	0.556448993	iYLR287C-A	TRUE	0.323766627						TRUE	17	54.2	116.6		"Ribosomal protein S30A (mammalian S30), identical to Rps30Bp"
YPR132W	RPS23B	TRUE!	TRUE	118.1	0.9903	"1,YGR118W,97%"	TRUE	0.561710372	iYPR131C	TRUE	0.063725095						TRUE	13	42.2	118.1		"Ribosomal protein S23 (yeast S28rp37YS14E. coli S12rat S23), identical to Rps23Ap"
YIL133C	RPL16A	TRUE!	TRUE	119.3	0.9907	"1,YNL069C,87%"	TRUE	0.908368274	iYIL133C	TRUE	0.573911631						TRUE	8	27.4	119.3		"Ribosomal protein L16 (rp22), nearly identical to Rpl16Bp"
YDL130W	RPP1B	TRUE!	TRUE	120	0.9911	"1,YDL081C,72%"	0	0.262724853	YDL130W-A	TRUE	0.328560849	iYDL130W-A	TRUE	0.560103964			TRUE	12.5	40.8	120		Acidic ribosomal protein P1B (L44primeAxYP1betaE. coli L12eIIBhuman and rat P1beta)
YLR075W	RPL10	TRUE!	TRUE	120.6	0.9913		TRUE	0.973024741	iYLR074C	TRUE	0.430309378						TRUE	17	55.5	120.6		Ribosomal protein L10 (yeast L9)
YNL302C	RPS19B	TRUE!	TRUE	121.4	0.9915	"1,YOL121C,95%"	0.918665841	0.840074122	iYNL302C	TRUE	0.076456504						TRUE	13	42.9	121.4		"Ribosomal protein S19 (rp55YS16Brat S19), nearly identical to Rps19Ap"
YJR094W-A	RPL43B	TRUE!	TRUE	122.1	0.9919	"1,YPR043W,90%"	TRUE	0.605945859	iYJR094C-0	0.736135422	0.587077519	iYJR094C-1	TRUE	0.378826942			TRUE	13	41.4	122.1		"Ribosomal protein L43B (human L37A), identical to Rpl43Ap"
YGR034W	RPL26B	TRUE!	TRUE	122.1	0.9919	"1,YLR344W,90%"	TRUE	0.917956903	iYGR033C	TRUE	0.278131806						TRUE	14	44.8	122.1		"Ribosomal protein L26 (yeast L33YL33rat L26), nearly identical to Rpl26Ap"
YJL189W	RPL39	TRUE!	TRUE	122.9	0.9922		TRUE	0.576292666	iYJL190C	TRUE	0.848167196						TRUE	14	46	122.9		Ribosomal protein L39
YHR010W	RPL27A	TRUE!	TRUE	122.9	0.9922	"1,YDR471W,90%"	TRUE	0.852239768	iYHR009C	TRUE	0.235412299	IntYHR010W	TRUE	0.250719987			TRUE	15	50.1	122.9		"Ribosomal protein L27 (yeast L27mammalian L27), identical to Rpl27Bp"
YOR293W	RPS10A	TRUE!	TRUE	124	0.9926	"1,YMR230W,93%"	TRUE	0.660159716	iYOR292C	TRUE	0.343378756						TRUE	12	40.2	124		"Ribosomal protein S10 (rat S10), nearly identical to Rps10Bp"
YJL190C	RPS22A	TRUE!	TRUE	124.1	0.993	"2,YLR367W,90%,iSNR44,70%"	TRUE	0.913986355	iYJL190C	TRUE	0.848167196						TRUE	12	39.1	124.1		"Ribosomal protein S22 (yeast S24rp50YS22rat S15A), nearly identical to Rps22Bp"
YGL103W	RPL28	TRUE!	TRUE	126.3	0.9934		0.981716523	0.857791754	iYGL104C	TRUE	0.337231969	IntYGL103W	TRUE	0.733564572			TRUE	15	50.3	126.3		Ribosomal protein L28 (yeast L29YL24rp44mouse and rat L27a)
YLR167W	RPS31	TRUE!	TRUE	126.6	0.9936		TRUE	0.930716695	iYLR166C	TRUE	0.74597164					ABF1?	FALSE	15	52.5	126.6		Fusion protein comprised of C-terminal half of ribosomal protein S31 and N-terminal half of ubiquitin (yeast S37YS24rat S27a)
YOL121C	RPS19A	TRUE!	TRUE	128.2	0.9938	"1,YNL302C,95%"	TRUE	0.962264151	iYOL121C	TRUE	0.438175351						TRUE	13	45.6	128.2		"Ribosomal protein S19 (rp55YS16Arat S19), nearly identical to Rps19Bp"
YER117W	RPL23B	TRUE!	TRUE	133.6	0.9944	"1,YBL087C,94%"	TRUE	0.977783263	iYER116C	TRUE	0.286687631						TRUE	14	50.3	133.6		"Ribosomal protein L23 (yeast L17aYL32E. coli L14rat L23), nearly identical to Rpl23Ap"
YGL135W	RPL1B	TRUE!	TRUE	138.9	0.9948	"1,YPL220W,99%"	TRUE	0.994972067	iYGL136C	TRUE	0.908959072						TRUE	16	61.7	138.9		"Large subunit ribosomal protein L1 (rat L10Aeubacterial L1archeal L1), identical to Rpl1Ap"
YHR203C	RPS4B	TRUE!	TRUE	140.7	0.995	"1,YJR145C,98%"	TRUE	0.962083769	iYHR203C	TRUE	0.614663046						TRUE	12	45.9	140.7		"Ribosomal protein S4 (yeast S7YS6rp5rat and human S4), identical to Rps4Ap"
YJR123W	RPS5	TRUE!	TRUE	142.9	0.9952		TRUE	0.995530726	iYJR122W	TRUE	0.056799871						TRUE	10	37.4	142.9		Ribosomal small subunit RPS5 (rp14YS8S2mammalian S5)
YNL178W	RPS3	TRUE!	TRUE	144.4	0.9954		TRUE	0.786307908	iYNL179C-0	0.342874268	0.198493551	iYNL179C-1	TRUE	0.797370332			TRUE	14	52.7	144.4		"Ribosomal protein S3 (rp13YS3mammalian S3), has a possible KH domain"
YBL087C	RPL23A	TRUE!	TRUE	147	0.9956	"1,YER117W,94%"	TRUE	0.959957765	iYBL087C	TRUE	0.703114727						TRUE	14	54.2	147		"Ribosomal protein L23 (yeast L17aYL32E. coli L14rat L23), nearly identical to Rpl23Bp"
YGL123W	RPS2	TRUE!	TRUE	148.6	0.9958		TRUE	0.948284118	iYGL124C	TRUE	0.246331237						TRUE	12	50.1	148.6		Ribosomal protein S2 (yeast S4YS5YP9rp12E. coli S5rat S2)
YOL039W	RPP2A	TRUE!	TRUE	152.1	0.996	"1,YDR382W,76%"	TRUE	0.600456235	iYOL040C	TRUE	0.673503591						TRUE	12	49.4	152.1		"Acidic ribosomal protein P2A (L44A2YP2alphaE. coli L12eIBhuman P2alpha), plays a role in the elongation step"
YGR085C	RPL11B	TRUE!	TRUE	152.3	0.9962	"1,YPR102C,97%"	TRUE	0.757179297	iYGR085C	TRUE	0.428685779						TRUE	12.5	52	152.3		"Ribosomal protein L11 (yeast L16YL22rp39BE. coli L5rat L11), nearly identical to Rpl11Ap"
YKR057W	RPS21A	TRUE!	TRUE	152.9	0.9964	"1,YJL136C,91%"	TRUE	0.97677063	iYKR056W	TRUE	0.672865124						TRUE	15	63	152.9		"Ribosomal protein S21 (yeast S26YS25rat S21), identical to Rps21Bp"
YJL136C	RPS21B	TRUE!	TRUE	156.6	0.997	"1,YKR057W,91%"	0.945433013	0.854035639	iYJL136C	TRUE	0.297621986						TRUE	13	54.1	156.6		"Ribosomal protein S21 (yeast S26YS25rat S21), identical to Rps21Ap"
YBL072C	RPS8A	TRUE!	TRUE	160	0.9972	"1,YER102W,98%"	TRUE	0.92496157	iYBL072C	TRUE	0.550375091						TRUE	12	53.7	160		"Ribosomal protein S8 (yeast S14YS9rp19mammalian S8), identical to Rps8Bp"
YER102W	RPS8B	TRUE!	TRUE	162.7	0.9974	"1,YBL072C,98%"	TRUE	0.968863435	iYER101C	TRUE	0.565535431						TRUE	11	47.3	162.7		"Ribosomal protein S8 (yeast S14YS9rp19mammalian S8), identical to Rps8Ap"
YGR148C	RPL24B	TRUE!	TRUE	163.7	0.9976	"1,YGL031C,93%"	TRUE	0.643256464	iYGR148C	TRUE	0.385214623						TRUE	13	55.8	163.7		"Ribosomal protein L24B (yeast L30rp29YL21rat L24), nearly identical to Rpl24Ap"
YIL018W	RPL2B	TRUE!	TRUE	164.4	0.9978	"1,YFR031C-A,96%"	TRUE	0.941437445	iYIL019W	TRUE	0.069866696						TRUE	12	54.9	164.4		Ribosomal protein L2 (yeast L5YL6rp8E. coli L2tobacco L2rat L8)
YFR031C-A	RPL2A	TRUE!	TRUE	172.1	0.9982	"1,YIL018W,96%"	TRUE	0.955712788	iYFR031C-A	TRUE	0.126645895						TRUE	12	56	172.1		Ribosomal protein L2 (Yeast L5YL6rp8E. coli L2tobacco L2rat L8)
YGR118W	RPS23A	TRUE!	TRUE	173.7	0.9984	"1,YPR132W,97%"	TRUE	0.973765432	iYGR117C	TRUE	0.00489229						TRUE	11.5	52.9	173.7		"Ribosomal protein S23 (yeast S28rp37YS14E. coli S12rat S23), identical to Rps23Bp"
YGL031C	RPL24A	TRUE!	TRUE	175.3	0.9986	"1,YGR148C,93%"	TRUE	0.879127838	iYGL031C	TRUE	0.815923207	IntYGL033W		0.422173566			TRUE	11	50.1	175.3		"Ribosomal protein L24A (yeast L30rp29YL21rat L24), nearly identical to Rpl24Bp"
YHR021C	RPS27B	TRUE!	TRUE	192.4	0.9992	"1,YKL156W,84%"	TRUE	0.746331237	iYHR021C	TRUE	0.337306202						WEAK	13	65.6	192.4		"Ribosomal protein S27 (yeast S27rp61YS20mammalian S27), nearly identical to Rps27Ap"
YPL079W	RPL21B	TRUE!	TRUE	201.6	0.9994	"1,YBR191W,94%"	0.915109144	0.887390263	iYPL080C	TRUE	0.473357792						TRUE	16	85.7	201.6		"Ribosomal protein L21 (rat L21), nearly identical to Rpl21Ap"
YGL189C	RPS26A	TRUE!	TRUE	208.4	0.9998	"1,YER131W,92%"	0.885964513	0.645182082	iYGL189C	TRUE	0.610620496						TRUE	14	76.1	208.4		"Ribosomal protein S26 (rat S26), nearly identical to Rps26Bp"
YPL249C-A	RPL36B	TRUE!	TRUE			"1,YMR194W,89%,"	TRUE	0.408556236	iYPL249C-A	TRUE	0.102339181						TRUE					"Ribosomal protein L36 (yeast L39YL39rat L36), nearly identical to Rpl36Ap"
YFL034C-A	RPL22B	TRUE!	TRUE				0.902407492	0.346827944	iYFL034C-A	TRUE	0.165523917						TRUE					"Ribosomal protein L22 (YL31), similar to Rpl22Ap"
YDL184C	RPL41A	TRUE!	TRUE			"1,YDL133C-A,99%"	0.918270264	0.457302474	iYDL184C	TRUE	0.463501183						TRUE					"Ribosomal protein L41A (yeast L47YL41human L41), identical to Rpl41Bp"
YDL133C-A	RPL41B	TRUE!	TRUE			"1,YDL184C,99%"	TRUE	0.310338049	iYDL133C-A	TRUE	0.373951782						TRUE					"Ribosomal protein L41B (yeast L47YL41human L41), identical to Rpl41Ap"
YMR194W	RPL36A	TRUE#	TRUE	37.6	0.9571	"1,YPL249C-A,89%"	TRUE	0.715234102							HAND PMTR		TRUE	14	14	37.6		"Ribosomal protein L36 (yeast L39YL39rat L36), nearly identical to Rpl36Bp"
YLR325C	RPL38	TRUE#	FALSE	56.9	0.968		TRUE	0.808235867	iYLR325C	0.087127668	0.066387029				"Orf only, OK"		TRUE	20	30.1	56.9	".01, .09, .08, .07, .77, .82"	Ribosomal protein L38
YNL301C	RPL18B	TRUE#	FALSE	60.7	0.9709	"1,YOL120C,95%"	TRUE	0.733524839	iYNL301C	0.798203651	0.400388645				"Orf only, OK, 5' Fragments Selected"	REB1?	FALSE	13	21.2	60.7	".86, .58, .78, .56, .82, .81"	"Ribosomal protein L18 (rp28rat L18), identical to Rpl18Ap"
YIL069C	RPS24B	TRUE#	FALSE	63.4	0.9721	"1,YER074W,97%"	0.91925684	0.789434707	iYIL069C	0.85623476	0.502355426				"ORF Only, Homolog not selected"		TRUE	14	23.1	63.4		"Ribosomal protein S24 (rat S24), identical to Rps24Ap"
YCR031C	RPS14A	TRUE#	TRUE	68.6	0.9747	"1,YJL191W,92%"	TRUE	0.981044724	iYCR031C	0.391235882	0.415987739	SNR189	TRUE	0.583870448	HAND PMTR		TRUE	18	33.5	68.6		"Ribosomal protein S14A (rp59, E. coli S11, rat and human S14) involved in crytopleurine resistance, nearly identical to Rps14Bp"
YDR025W	RPS11A	TRUE#	TRUE	71.3	0.9759	"1,YBR048W,96%"	0.917140123	0.736354776							HAND PMTR		TRUE	12.3	23.5	71.3	No Promoter	"Ribosomal protein S11 (yeast S18YS12rp41E. coli S17human and rat S11), identical to Rps11Bp"
YDR418W	RPL12B	TRUE#	TRUE	74.9	0.977	"1,YEL054C,92%"	TRUE	0.961655558							HAND PMTR		TRUE	11	23.1	74.9	TRUE	"Ribosomal protein L12 (yeast L15YL23E. coli L11rat L12a), identical to Rpl12Ap"
YLR406C	RPL31B	TRUE#	TRUE	80.1	0.9786	"1,YDL075W,91%"	0.616325667	0.449876983	iYLR406C	TRUE	0.935035914				"High P CNTL, but added 11-22 on basis of control RE-AMPs"		TRUE	11.3	24	80.1		"Ribosomal protein L31 (yeast L34YL36YL28rat L31), nearly identical to Rpl31Ap"
YOL120C	RPL18A	TRUE#	TRUE	91.3	0.9828	"1,YNL301C,95%"	TRUE	0.978381867	iYOL120C	0.533483399	0.507297854				HAND PMTR		TRUE	13	31.5	91.3	".53, .77, .51, .49, .85, NV"	"Ribosomal protein L18 (rp28rat L18), identical to Rpl18Bp"
YKL006W	RPL14A	TRUE#	TRUE	106.2	0.9869	"1,YHL001W,96%"	TRUE	0.872953134	iYKL006C-A	TRUE	0.713733235				HAND PMTR		TRUE	12	34.1	106.2		"Ribosomal protein L14 (mammalian L14), nearly identical to Rpl14Bp"
YGL147C	RPL9A	TRUE#	TRUE	115.8	0.9899	"1,YNL067W,94%"	TRUE	0.448884758	iYGL147C	0.188112132	0.195836419				"Hand checked, ORF Homology, Upstream ORF selected"		TRUE	11	34.5	115.8	".14, .21, .05, .17, .64, .66"	"Ribosomal protein L9 (YL11rp25rp24E. coli L6rat L9), nearly identical to Rpl9Bp"
YBR191W	RPL21A	TRUE#	TRUE	202.4	0.9996	"1,YPL079W,94%"	TRUE	0.975146199							"HAND PMTR added 12-21, High O CNTL"		TRUE	12	64.7	202.4	No Promoter	"Ribosomal protein L21 (rat L21), nearly identical to Rpl21Bp"
YFR032C-A	RPL29	TRUE#	TRUE				0.846748877	0.460380153	iYFR032C-A	0.919031571	0.192869161				PMTR .919		TRUE					Ribosomal protein L29 (YL43rat L29rat rp17E. coli L29.e)