Fragment ID	Type	"Subtype (in addition, * indicates homology, + high control)"	"%tile Rank, SIR4 IP"	Control Median	Gene	Dwn ORF1	Dwn ORF 2	Dwn Gene1	Dwn Gene 2	RAP1? Selected	SIR2? Selected	SIR3? Selected	Mating?	Chr	Start	Stop	Telomeric?		Desc.	Dwnstr ORF 1 Desc	Dwnstr ORF 2 Desc
ITL(CAA)A	INTERGENIC	High Control	0.983210483	0.987881848		YAR023C	YAR027W							1	181249	182517				"strong similarity to subtelomerically-encoded proteins such as Cos5p, Ybr302p, Cos3p, Cos1p, Cos4p, Cos8p, Cos6p, Cos9p"	"strong similarity to subtelomerically-encoded proteins such as Cos5p, Ybr302p, Cos3p, Cos1p, Cos4p, Cos8p, Cos6p, Cos9p, and Ycr007p"
IYBR134W	INTERGENIC	High Control	0.970292127	0.693009232		YBR135W		cks1						2	504598	504808				"Protein associated with Cdc28p protein kinase, homolog of S. pombe suc1"	
IYCR100C	INTERGENIC	High Control	0.986383892	0.963814225		YCR100C								3	300943	301204				similarity to Pep1p; probably represents a fragmented coding region of a pseudogene	
IYMR079W	INTERGENIC	High Control	0.973791974	0.975606976								TRUE		13	426058	426711					
YAL041W	ORF	High Control	0.977141442	0.997925039	CDC24							TRUE		1	62842	65406			"CDC24 -- GTP-GDP exchange factor for Cdc42p, involved in bud emergence, bud site selection and formation of mating projection (shmoo)"		
YDL125C	ORF	High Control	0.973628174	0.94516877	HNT1	YDL126C	YDL124W	CDC48						4	239605	239018			HNT1 -- Member of HIT family of Zn-binding proteins and the histidine triad nucleotide-binding protein family	"Protein of the AAA family of ATPases, required for cell division and homotypic membrane fusion"	unknown function
YDR350C	ORF	High Control	0.980679873	0.959653014	TCM10	YDR349C	YDR351W	YPS7	SBE2					4	1178208	1176373			TCM10 -- unknown function	"Yapsin 7, GPI-anchored aspartyl protease"	Golgi cell wall formation
YFL040W	ORF	High Control	0.993150685	0.999916426	YFL040W						TRUE	TRUE		6	51351	52973			"YFL040W -- Putative hexose transporter, member of hexose transport family of major facilitator superfamily (MFS)"		
YIL102C	ORF	High Control	0.988364417	0.961641504	YIL102C									9	174884	174579			YIL102C -- unknown function		
YJL113W	ORF	High Control	0.983456183	0.984180239		YJL112W					TRUE	TRUE		10	197614	203026				"unknown, has WD (WD-40) repeats"	
YLR167W	ORF	High Control	0.979204489	0.938723704	RPS31	YLR166C		SEC10		TRUE				12	498949	499407			RPS31 -- Fusion protein comprised of C-terminal half of ribosomal protein S31 and N-terminal half of ubiquitin (yeast S37YS24rat S27a)	Component of exocyst complex required for exocytosis	
YNR072W	ORF	High Control	0.975055026	0.999209097	HXT17	YNR071C					TRUE	TRUE		14	772652	774346			"HXT17 -- Putative hexose transporter, member of hexose transporter family of major facilitator superfamily (MFS)"	similarity to UDPglucose 4-epimerase	
YOR143C	ORF	High Control	0.981927711	0.993585056	THI80							TRUE		15	602340	601381			"THI80 -- Thiamine pyrophosphokinase, converts thiamine to the coenzyme thiamine pyrophosphate"		
YPR121W	ORF	High Control	0.986548935	0.990344775	THI22	YPR120C	YPR122W	CLB5	AXL1			TRUE		16	778578	780296			"THI22 -- Bipartite protein consisting of N-terminal hydroxymethylpyrimidine phosphate (HMP-P) kinase domain, needed for thiamine biosynthesis, fused to C-terminal Pet18p-like domain of indeterminant function"	"B-type cyclin appearing late in G1, involved in initiation of DNA synthesis"	Protease involved in second proteolytic step of a-factor N-terminal processing
IYCR103C	INTERGENIC	Homology	0.987044067	0.820531665		YCR103C	YCR104W		PAU3	TRUE	TRUE			3	306310	306519				unknown	Member of seripauperin (PAU) family
YCR103C	ORF	Homology	0.977477477	0.924805306	YCR103C	YCR104W		PAU3		TRUE	TRUE			3	306310	305975			YCR103C -- unknown function	"Stress-induced protein of the PAU1 family, although homology does not extend to the serine-rich region"	
YGL260W	ORF	Homology	0.984073279	0.662627604	YGL260W	YGL261C	YGL259W		YPS5	TRUE	TRUE			7	6860	7090			YGL260W -- strong similarity to Yir040p and members of Ybl108p/Ycr103p/Ykl223p family	similarity to Pau1p and members of the PAU1 (seripauperin) family	"Yapsin 5, GPI-anchored aspartyl protease"
YIR040C	ORF	Homology	0.978049183	0.488036643	YIR040C	YIR039C	YIR041W	YPS6		TRUE	TRUE			9	433717	433385			"YIR040C -- similarity to Yil174p, Yil175p, and Ycr103p, member of Ybl108p/Ycr103p/Ykl223p family"	"Yapsin 6, GPI-anchored aspartyl protease"	Member of seripauperin (PAU) family
YLR432W	ORF	Homology	0.98972854	0.639337122	YLR432W	YLR431C				TRUE	TRUE			12	1002551	1004122			YLR432W -- highly similar to Yhr216p and inosine-5'-monophosphate dehydrogenase of human and E. coli	unknown	
ITH(GUG)G1	INTERGENIC	Internal Tar	0.982065705	0.717702708										7	110698	110857					
IYDL226C	INTERGENIC	Internal Tar	0.970044562	0.616316449		YDL226C	YDL225W	GCS1	SHS1					4	52174	52446				GTPase-activating protein (GAP) for ADP-ribosylation factors Arf1p and Arf2p; member of the Gcs1p/Glo3p/Sps18p family	"Septin, component of 10 nm filaments of mother-bud neckinvolved in cytokinesis"
IYDRCSIGMA1	INTERGENIC	Internal Tar	0.976068658	0.884518588		YDR098C-A	YDR099W		bmh2					4	651541	651720					"Homolog of mammalian 14-3-3 protein, has strong similarity to Bmh1p"
IYHR162W	INTERGENIC	Internal Tar	0.978723404			YHR163W		SOL3			TRUE			8	423461	423630				Weak multicopy suppressor of los1-1	
IYHR175W	INTERGENIC	Internal Tar	0.993315399			YHR176W								8	453438	454226				similarity to flavin-containing monooxygenases and to mammalian dimethylalanine monooxygenases	
IYHR196W	INTERGENIC	Internal Tar	0.982310263	0.555404449		YHR197W								8	493653	493891				unknown	
IYJR084W	INTERGENIC	Internal Tar	0.980937448	0.325295378										10	584692	584808					
IYJR144W	INTERGENIC	Internal Tar	0.985408005	0.688104487						TRUE	TRUE	TRUE		10	701380	701716					
IYKL137W	INTERGENIC	Internal Tar	0.971498771	0.621930203		YKL136W								11	186299	186423				unknown	
IYMR217W	INTERGENIC	Internal Tar	0.973300573	0.40904356										13	703366	703578					
IYOL162W	INTERGENIC	Internal Tar	0.990827191	0.290762478						TRUE	TRUE	TRUE		15	10765	11548					
IYOR235W	INTERGENIC	Internal Tar	0.972038803	0.412149953		YOR236W		dfr1		TRUE				15	780182	780904				Dihydrofolate reductase	
IYORCDELTA11	INTERGENIC	Internal Tar	0.983990758	0.743468636		YOR058C		ASE1						15	438484	438644				"Microtubule-associated protein localized to the spindle midzone, required for anaphase spindle elongation"	
YBR072W	ORF	Internal Tar	0.972235872		HSP26	YBR073W		RDH54						2	381989	382633			"HSP26 -- Heat shock 26kD, expressed during entry to stationary phase and induced by osmostress"	required for mitotic diploid-specific recombination and repair and for meiosis	
YDL240W	ORF	Internal Tar	0.9998362		LRG1									4	22823	25876			"LRG1 -- GTPase-activating rho/rac family, expressed highest in sporulating cells, contains LIM domains"		
YGL079W	ORF	Internal Tar	0.976085176		YGL079W									7	359442	360098			YGL079W -- unknown function		
YNL325C	ORF	Internal Tar	0.997788698	0.566815114	FIG4	YNL326C	YNL324W			TRUE	TRUE	TRUE		14	31377	28738			FIG4 -- Suppressor of sac1 mutation and protein induced by mating factor	similarity to Akr1p and Ydr126p	unknown function
YNL326C	ORF	Internal Tar	0.985326486	0.433171697	YNL326C					TRUE	TRUE	TRUE		14	28346	27336			YNL326C -- similarity to Akr1p and Ydr126p		
YPR052C	ORF	Internal Tar	0.98009828	0.750204007	NHP6A						TRUE	TRUE		16	665969	665688			NHP6A -- Protein related to mammalian nonhistone protein HMG1function redundant with Nhp6Bp		
IYCL065W-0	INTERGENIC	Mating	0.997146817	0.746432029						TRUE	TRUE	TRUE	TRUE	3	14108	14947	TRUE				
IYCL065W-1	INTERGENIC	Mating	0.993641477	0.859177867						TRUE	TRUE		TRUE	3	14947	15787	TRUE				
IYCL069W	INTERGENIC	Mating	0.994375153	0.36580234						TRUE	TRUE	TRUE	TRUE	3	11072	11493	TRUE				
IYCL073C	INTERGENIC	Mating	0.982228744	0.426015749		YCL073C	YCL069W				TRUE		TRUE	3	8317	9696	TRUE			Member of the yeast-specific multidrug-resistance (MFS-MDR) family of the major facilitator superfamily (MFS)	Member of multidrug-resistance 14 spanner family of major facilitator superfamily (MFS-MDR)
IYCLWOMEGA2-0	INTERGENIC	Mating	0.992055692	0.6613843						TRUE	TRUE		TRUE	3	4314	5392	TRUE				
IYCR096C	INTERGENIC	Mating	0.995788425	0.236503954		YCR096C	YCR097W	a2	A1	TRUE	TRUE	TRUE	TRUE	3	292260	292557				Regulatory protein A2p (no known function); sequence is the same as the last 119 residues of Alpha2p	"Homeodomain regulatory proteinwith Alpha2p, represses transcription of haploid-specific genes in diploid cells"
IYCR097W	INTERGENIC	Mating	0.997379197	0.614692731						TRUE	TRUE	TRUE	TRUE	3	293043	293725					
IYCRWDELTA12	INTERGENIC	Mating	0.989656765	0.354197057		YCR095C				TRUE	TRUE	TRUE	TRUE	3	290434	290644				unknown	
IYCRWOMEGA3	INTERGENIC	Mating	0.99478275	0.090561164		YCR095C				TRUE	TRUE	TRUE	TRUE	3	290889	291901				unknown	
YCL064C	ORF	Mating	0.990462216	0.872294128	CHA1	YCL063W				TRUE	TRUE		TRUE	3	16869	15787	TRUE		CHA1 -- L-serine/L-threonine deaminase	sensitivity to certain drugs; has similarity to plant aminocyclopropane-1-carboxylate synthase	
YCL068C	ORF	Mating	0.995924024	0.522753576	YCL068C					TRUE	TRUE	TRUE	TRUE	3	12065	11493	TRUE		YCL068C -- strong similarity to the N-terminal third of Bud5p		
IYCL067C	INTERGENIC	Mating*	0.989891579	0.48913782		YCL067C	YCL066W			TRUE	TRUE	TRUE	TRUE	3	13007	13271	TRUE			Homeodomain regulatory protein Alpha2p; acts with Mcm1p to repress a-specific genes and with A1p to repress haploid-specific genes	
IYCL068C	INTERGENIC	Mating*	0.988859548	0.104917281		YCL068C				TRUE	TRUE		TRUE	3	12065	12375	TRUE			strong similarity to the N-terminal third of Bud5p	
IYCR038C	INTERGENIC	Mating*	0.986076986	0.168441941		YCR038C		bud5		TRUE	TRUE		TRUE	3	197966	198276				"GTP/GDP exchange factor for Rsr1p/Bud1p involved in bud site selection, mutants bud at random sites"	
IYCR039C	INTERGENIC	Mating*	0.989483981	0.381667695		YCR039C	YCR040W			TRUE	TRUE	TRUE	TRUE	3	198908	199172					"Regulatory protein Alpha1p, with Mcm1p, activates alpha-specific genes"
YCL065W	ORF	Mating*	0.995048688	0.844337307	YCL065W	YCL067C				TRUE	TRUE	TRUE	TRUE	3	13740	14108	TRUE		YCL065W -- unknown functionquestionable ORF	Homeodomain regulatory protein Alpha2p; acts with Mcm1p to repress a-specific genes and with A1p to repress haploid-specific genes	
YCL066W	ORF	Mating*	0.997880492	0.937669845		YCL067C	YCL065W			TRUE	TRUE	TRUE	TRUE	3	13271	13798	TRUE			Homeodomain regulatory protein Alpha2p; acts with Mcm1p to repress a-specific genes and with A1p to repress haploid-specific genes	unknown functionquestionable ORF
YCL067C	ORF	Mating*	0.995249795	0.669769686		YCL068C	YCL066W			TRUE	TRUE	TRUE	TRUE	3	13007	12375	TRUE			strong similarity to the N-terminal third of Bud5p	
YCL069W	ORF	Mating*	0.993645816	0.932818019	YCL069W	YCL073C				TRUE	TRUE	TRUE	TRUE	3	9696	11072	TRUE		YCL069W -- Member of multidrug-resistance 14 spanner family of major facilitator superfamily (MFS-MDR)	Member of the yeast-specific multidrug-resistance (MFS-MDR) family of the major facilitator superfamily (MFS)	
YCL073C	ORF	Mating*	0.973750713	0.325424093		YCL069W					TRUE		TRUE	3	8317	6470	TRUE			Member of the multidrug-resistance 14 spanner family of the major facilitator superfamily (MFS-MDR)	
YCR039C	ORF	Mating*	0.995190348	0.607021884	ALPHA2	YCR038C	YCR040W	bud5		TRUE	TRUE	TRUE	TRUE	3	198908	198276			"ALPHA2 -- Homeodomain regulatory protein Alpha2p, interacts with Mcm1p to repress a-specific genes and with A1p to repress haploid-specific genes"	"GTP/GDP exchange factor for Rsr1p/Bud1p involved in bud site selection, mutants bud at random sites"	"Regulatory protein Alpha1p, with Mcm1p, activates alpha-specific genes"
YCR040W	ORF	Mating*	0.997472895	0.77064478	ALPHA1	YCR039C	YCR041W			TRUE	TRUE	TRUE	TRUE	3	199172	199699			"ALPHA1 -- Regulatory protein Alpha1p, with Mcm1p, activates alpha-specific genes"		unknown function
YCR041W	ORF	Mating*	0.992744762	0.580463109	YCR041W	YCR039C				TRUE	TRUE	TRUE	TRUE	3	199641	199973			YCR041W -- unknown function		
YCR096C	ORF	Mating*	0.995413595	0.881525714	A2	YCR095C	YCR097W		A1	TRUE	TRUE		TRUE	3	292260	291901			A2 -- Regulatory protein A2p (no known function)sequence is the same as the last 119 residues of Alpha2p	unknown	"Homeodomain regulatory proteinwith Alpha2p, represses transcription of haploid-specific genes in diploid cells"
YCR097W-A	INTERGENIC	Mating*	0.993284193	0.779682228		YCR096C	YCR097W	a2	A1	TRUE	TRUE	TRUE	TRUE	3	292557	293003				Regulatory protein A2p (no known function); sequence is the same as the last 119 residues of Alpha2p	"Homeodomain regulatory proteinwith Alpha2p, represses transcription of haploid-specific genes in diploid cells"
YCRWOMEGA3	LTR	Mating*	0.990299177	0.681052369		YCR095C				TRUE	TRUE	TRUE	TRUE	3	290644	290889				unknown	
YCR097W	ORF	Mating+*	0.9995086	0.959311991	A1	YCR096C		a2		TRUE	TRUE	TRUE	TRUE	3	292557	293043			"A1 -- Homeodomain regulatory proteinwith Alpha2p, represses transcription of haploid-specific genes in diploid cells"	Regulatory protein A2p (no known function); sequence is the same as the last 119 residues of Alpha2p	
IYBL108W	INTERGENIC	Telomere	0.977306486	0.424662177		YBL107W-A				TRUE	TRUE			2	8482	8848	TRUE				
IYBL109W-1	INTERGENIC	Telomere	0.992903119	0.615066441		YBL108W				TRUE	TRUE	TRUE		2	7151	8177	TRUE			unknown	
IYCL074W	INTERGENIC	Telomere	0.992407988	0.304464304						TRUE	TRUE			3	3742	4065	TRUE				
IYEL074W	INTERGENIC	Telomere	0.991912857	0.599115184						TRUE	TRUE	TRUE		5	6464	7230	TRUE				
IYERWOMEGA2-0	INTERGENIC	Telomere	0.997706798	0.4753754		YER189W				TRUE	TRUE	TRUE		5	569020	570085	TRUE			"similarity to subtelomerically-encoded proteins including Yil177p, Yhl049p, and Yjl225p"	
IYHL049C-0	INTERGENIC	Telomere	0.996250102	0.659802923		YHL049C	YHL048W		COS8	TRUE	TRUE	TRUE		8	4540	5470	TRUE			"similarity to other subtelomerically-encoded proteins including Yer189p, Yml133p, and Yjl225p, coded from a subtelomeric Y' region"	Member of COS family of subtelomerically-encoded proteins
IYKR105C	INTERGENIC	Telomere	0.984485889	0.270753917		YKR105C	YKR106W			TRUE	TRUE			11	660096	661074	TRUE			Member of the multidrug-resistance 14-spanner family of the major facilitator superfamily (MFS-MDR)	Member of yeast-specific putative multidrug-resistance family of major facilitator superfamily (MFS)
IYKR106W-1	INTERGENIC	Telomere	0.992573032	0.606509117						TRUE	TRUE	TRUE		11	663991	665062	TRUE				
IYLL064C	INTERGENIC	Telomere	0.971529955	0.594955875		YLL064C				TRUE	TRUE			12	13445	14648	TRUE			strong similarity to members of the PAU1 family	
IYLL066C-0	INTERGENIC	Telomere	0.970704737	0.893804037		YLL066C	YLL065W		GIN11	TRUE	TRUE			12	9836	10781	TRUE			"near identity to other subtelomerically-encoded proteins including Yhl050p, Yil177p, and Yhr219p"	"similarity to other subtelomerically-encoded proteins including Yjr162p, Ykl225p, and Yfl063p"
IYLR460C-1	INTERGENIC	Telomere	0.982145782	0.842033991		YLR460C	YLR461W		PAU4	TRUE	TRUE			12	1061898	1062914	TRUE			strong similarity to Ycr102p	Member of seripauperin (PAU) family
IYOL165C	INTERGENIC	Telomere	0.989773975	0.817582712		YOL165C	YOL164W	aad15			TRUE			15	2078	2894	TRUE			Probable aryl-alcohol dehydrogenase	similarity to Pseudomonas sp. alkyl sulfatase
IYOL166C	INTERGENIC	Telomere	0.994140947	0.771016157		YOL166C				TRUE	TRUE	TRUE		15	1338	1647	TRUE			unknown	
IYPR201W-1	INTERGENIC	Telomere	0.992255645	0.565186234		YPR202W				TRUE		TRUE		16	942079	943027	TRUE			similarity to other subtelomerically-encoded proteins	
TEL15R-1	INTERGENIC	Telomere	0.997051597	0.862813905						TRUE	TRUE	TRUE		15	1083285	1084602	TRUE				
TEL15R-6	INTERGENIC	Telomere	0.984199403	0.715661051						TRUE	TRUE			15	1089875	1091193	TRUE				
TEL6R	INTERGENIC	Telomere	0.995760985	0.494896516		YGL263W		COS12		TRUE	TRUE	TRUE		6	269505	270095	TRUE			Member of the COS family of subtelomerically-encoded proteins	
YBLWDELTA3	LTR	Telomere	0.986136326	0.700967332										2	9425	9518	TRUE				
YCL074W	ORF	Telomere	0.996005543	0.819346353						TRUE	TRUE	TRUE		3	2816	3742	TRUE				
YCLWTY5-1A	TRANS	Telomere	0.997276778	0.698451288		YBR302C	YCL075W	COS2		TRUE	TRUE	TRUE		3	1522	2219	TRUE			Member of the COS family of subtelomerically-encoded proteins	
YCLWTY5-1B	TRANS	Telomere	0.99513121	0.700112101		YCL074W				TRUE	TRUE	TRUE		3	2219	3266	TRUE				
YCLWTY5-1C	TRANS	Telomere	0.994130594	0.441796055						TRUE	TRUE	TRUE		3	3266	3964	TRUE				
YFR057W	ORF	Telomere	0.992874693	0.901201647	YFR057W	YGL263W		COS12			TRUE			6	269049	269504	TRUE		YFR057W -- unknown function	Member of the COS family of subtelomerically-encoded proteins	
YGR295C	ORF	Telomere	0.978787879	0.330784673	COS6	YGR296W		YRF1-3		TRUE				7	1082725	1081580	TRUE		COS6 -- Member of COS family of subtelomerically-encoded proteins	similarity to other subtelomerically-encoded proteins including Yer190p	
YNR076W	ORF	Telomere	0.976359338	0.67841356	PAU6					TRUE	TRUE			14	781913	782275	TRUE		PAU6 -- Member of seripauperin (PAU) family (YLL064C and PAU6 code for identical proteins)		
YOL166C	ORF	Telomere	0.994758395	0.833899033	YOL166C					TRUE	TRUE	TRUE		15	1338	1000	TRUE		YOL166C -- unknown function		
YOLWTAU1	LTR	Telomere	0.981739627	0.881243336		YOL165C	YOL164W	aad15			TRUE			15	3809	3986	TRUE			Probable aryl-alcohol dehydrogenase	similarity to Pseudomonas sp. alkyl sulfatase
IYKR106W-0	INTERGENIC	Telomere+	0.991195891	0.780235386						TRUE	TRUE	TRUE		11	662921	663991	TRUE				
YBL111C	ORF	Telomere+	0.975078396	0.931589043	YBL111C	YBL112C	YBL109W			TRUE				2	5009	2907	TRUE		YBL111C -- unknown functionsubtelomerically encoded		unknown function
YBL113C	ORF	Telomere+	0.972272652	0.873911342	YBL113C					TRUE	TRUE			2	2658	280	TRUE		YBL113C -- unknown functionsubtelomerically encoded		
YFL064C	ORF	Telomere+	0.977989729	0.89321116	YFL064C	YFL065C	YFL063W			TRUE	TRUE			6	3846	3322	TRUE		"YFL064C -- similarity to other subtelomerically-encoded proteins including Yhl049p, Yil177p, Yjl225p, Yer189p, Yel075p, and Yer190p"	"similarity to other subtelomerically-encoded proteins including Yhl049p, Yil177p, Yjl225p, Yer190p, Yhr218p, and Yel076p"	similarity to Gin11p and Ykl225p
YFL066C	ORF	Telomere+	0.976563789	0.931378383	YFL066C					TRUE				6	2615	1437	TRUE		"YFL066C -- near identity to other subtelomerically-encoded proteins including Yil177p, Yhl050p, and Yer190p"		
YHL049C	ORF	Telomere+	0.988505747	0.967340508	YHL049C	YHL050C	YHL048W		COS8	TRUE				8	4540	3725	TRUE		"YHL049C -- similarity to other subtelomerically-encoded proteins including Yer189p, Yml133p, and Yjl225p, coded from a subtelomeric Y' region"	"similarity to other subtelomerically-encoded proteins, putative DNA helicase"	Member of COS family of subtelomerically-encoded proteins
YLR462W	ORF	Telomere+	0.987119915	0.981557007	YLR462W					TRUE				12	1065951	1066559	TRUE		YLR462W -- unknown function		
YLR463C	ORF	Telomere+	0.981495068	0.974025837	YLR463C					TRUE				12	1066811	1066260	TRUE		YLR463C -- unknown function with similarity to other subtelomerically-coded proteins		
IYAL069W	INTERGENIC	Telomere+*	0.996820739	0.64888122						TRUE	TRUE	TRUE		1	649	1807	TRUE				
IYBL109W-0	INTERGENIC	Telomere+*	0.998443898	0.898661446		YBL108W				TRUE	TRUE	TRUE		2	6125	7151	TRUE			unknown	
IYBL111C	INTERGENIC	Telomere+*	0.99486427	0.843097869		YBL111C	YBL109W			TRUE	TRUE	TRUE		2	5009	5790	TRUE				unknown function
IYCL075W	INTERGENIC	Telomere+*	0.992826282	0.526227947		YCL074W				TRUE	TRUE	TRUE		3	2558	2816	TRUE				
IYDR542W	INTERGENIC	Telomere+*	0.998514606	0.837881339						TRUE	TRUE	TRUE		4	1523652	1524675	TRUE				
IYDR543C	INTERGENIC	Telomere+*	0.998777207	0.969559855		YDR543C				TRUE	TRUE	TRUE		4	1524974	1525136	TRUE			similarity to other subtelomerically-encoded proteins	
IYDR544C	INTERGENIC	Telomere+*	0.993893382	0.710498424		YDR544C	YDR545W		YRF1-1	TRUE	TRUE	TRUE		4	1525564	1526362	TRUE			unknown	"near identity to the family of subtelomerically-encoded proteins including Yil177p, Yhl049p, and Yjl225p"
IYEL075C	INTERGENIC	Telomere+*	0.979701639	0.640205231		YEL075C	YEL074W			TRUE	TRUE			5	5713	6126	TRUE			"similarity to other subtelomerically-encoded proteins including Yhl049p, Yil177p, and Yjl225p"	unknown function
IYERWOMEGA2-1	INTERGENIC	Telomere+*	0.995378775	0.572012086		YER189W				TRUE	TRUE	TRUE		5	570085	571151	TRUE			"similarity to subtelomerically-encoded proteins including Yil177p, Yhl049p, and Yjl225p"	
IYFL063W	INTERGENIC	Telomere+*	0.998771499	0.503975825		YFL062W		COS4		TRUE	TRUE	TRUE		6	5521	6426	TRUE			Member of the COS family of subtelomerically-encoded proteins	
IYFL064C	INTERGENIC	Telomere+*	0.997065297	0.805191437		YFL064C	YFL063W			TRUE	TRUE	TRUE		6	3846	5066	TRUE			"similarity to other subtelomerically-encoded proteins including Yhl049p, Yil177p, Yjl225p, Yer189p, Yel075p, and Yer190p"	similarity to Gin11p and Ykl225p
IYGR295C-0	INTERGENIC	Telomere+*	0.992655554	0.401601505		YGR295C	YGR296W	COS6	YRF1-3	TRUE	TRUE	TRUE		7	1082725	1083792	TRUE			Member of the COS family of subtelomerically-encoded proteins	similarity to other subtelomerically-encoded proteins including Yer190p
IYGR295C-1	INTERGENIC	Telomere+*	0.995331695	0.391653382		YGR295C	YGR296W	COS6	YRF1-3	TRUE	TRUE	TRUE		7	1083792	1084860	TRUE			Member of the COS family of subtelomerically-encoded proteins	similarity to other subtelomerically-encoded proteins including Yer190p
IYHL049C-1	INTERGENIC	Telomere+*	0.995597946	0.518748338		YHL049C	YHL048W		COS8	TRUE	TRUE	TRUE		8	5470	6400	TRUE			"similarity to other subtelomerically-encoded proteins including Yer189p, Yml133p, and Yjl225p, coded from a subtelomeric Y' region"	Member of COS family of subtelomerically-encoded proteins
IYHR216W	INTERGENIC	Telomere+*	0.999266324	0.758268041						TRUE	TRUE	TRUE		8	555962	556576	TRUE				
IYHR217C	INTERGENIC	Telomere+*	0.98793511	0.643556183		YHR217C	YHR218W			TRUE	TRUE			8	557037	558009	TRUE			unknown	"near identity to subtelomerically-encoded proteins including Yhr219p and Yfl065p, possible pseudogene"
IYIL177C-0	INTERGENIC	Telomere+*	0.993728338	0.7601293		YIL177C				TRUE	TRUE	TRUE		9	6147	7470	TRUE			"similarity to subtelomerically-encoded proteins including Yjl225p, Yfl068p, and Yhl093p"	
IYIL177C-1	INTERGENIC	Telomere+*	0.997854431	0.420248972		YIL177C				TRUE	TRUE	TRUE		9	7470	8793	TRUE			"similarity to subtelomerically-encoded proteins including Yjl225p, Yfl068p, and Yhl093p"	
IYJL225C-0	INTERGENIC	Telomere+*	0.997297297	0.903339656		YJL225C				TRUE	TRUE	TRUE		10	6130	7453	TRUE			"near identity to other subtelomerically-encoded proteins including Yil177p, Yhr219p, and Yhl079p"	
IYJL225C-1	INTERGENIC	Telomere+*	0.998027995	0.862216026		YJL225C				TRUE	TRUE	TRUE		10	7453	8776	TRUE			"near identity to other subtelomerically-encoded proteins including Yil177p, Yhr219p, and Yhl079p"	
IYJR161C	INTERGENIC	Telomere+*	0.995659296	0.67484493		YJR161C		COS5		TRUE	TRUE	TRUE		10	743688	744600	TRUE			Member of the COS family of subtelomerically-encoded proteins	
IYKL225W	INTERGENIC	Telomere+*	0.996899214	0.318762887						TRUE		TRUE		11	799	1811	TRUE				
IYLL065W	INTERGENIC	Telomere+*	0.995741196	0.73441198						TRUE	TRUE	TRUE		12	12076	13083	TRUE				
IYLL066C-1	INTERGENIC	Telomere+*	0.998184519	0.700371134		YLL066C	YLL065W		GIN11	TRUE	TRUE	TRUE		12	10781	11726	TRUE			"near identity to other subtelomerically-encoded proteins including Yhl050p, Yil177p, and Yhr219p"	"similarity to other subtelomerically-encoded proteins including Yjr162p, Ykl225p, and Yfl063p"
IYLL067C-1	INTERGENIC	Telomere+*	0.996369038	0.430818464		YLL067C				TRUE	TRUE	TRUE		12	5210	6120	TRUE			similar to other subtelomerically-encoded proteins	
IYLR461W-0	INTERGENIC	Telomere+*	0.997524344	0.732451018		YLR462W				TRUE	TRUE	TRUE		12	1063276	1064613	TRUE			unknown	
IYLR461W-1	INTERGENIC	Telomere+*	0.997635934	0.942299055		YLR462W				TRUE	TRUE	TRUE		12	1064613	1065951	TRUE			unknown	
IYLR466W	INTERGENIC	Telomere+*	0.994049075	0.696689915		YLR467W		YRF1-5		TRUE	TRUE	TRUE		12	1071230	1072503	TRUE			"Y'helicase with near identity to other subtelomerically-encoded proteins including Yer189p, Yml133p, and Yjl225p"	
IYML133C-0	INTERGENIC	Telomere+*	0.995296254	0.919819963		YML133C	YML132W		COS3	TRUE	TRUE	TRUE		13	4684	5964	TRUE			"similarity to other subtelomerically-encoded proteins including Yer189p, and Yjl225p"	Member of COS family of subtelomerically-encoded proteins
IYML133C-1	INTERGENIC	Telomere+*	0.998101997	0.743149017		YML133C	YML132W		COS3	TRUE	TRUE	TRUE		13	5964	7244	TRUE			"similarity to other subtelomerically-encoded proteins including Yer189p, and Yjl225p"	Member of COS family of subtelomerically-encoded proteins
IYMR324C	INTERGENIC	Telomere+*	0.975381104	0.493762091		YMR324C	YMR325W			TRUE	TRUE			13	922443	922640	TRUE			similarity to members of the Ybl108p/Ycr103p/Ykl223p family	Member of seripauperin (PAU) family
IYNL337W	INTERGENIC	Telomere+*	0.996203994	0.778197916		YNL336W		COS1		TRUE	TRUE	TRUE		14	7419	8330	TRUE			Member of the COS family of subtelomerically-encoded proteins	
IYNL338W	INTERGENIC	Telomere+*	0.999180999	0.890050961		YNL337W				TRUE	TRUE	TRUE		14	6719	7165	TRUE			unknown	
IYNL339C	INTERGENIC	Telomere+*	0.993398251	0.671339536		YNL339C	YNL338W	YRF1-6		TRUE	TRUE			14	6098	6561	TRUE			near identity to other subtelomerically-encoded proteins	unknown function
IYNR076W	INTERGENIC	Telomere+*	0.996068796	0.253569328						TRUE	TRUE	TRUE		14	782277	783284	TRUE				
IYPL283C-0	INTERGENIC	Telomere+*	0.997798973	0.747115943		YPL283C		YRF1-7		TRUE	TRUE	TRUE		16	6007	6970	TRUE			"near identity to other subtelomerically-encoded protein, including Ygr296p"	
IYPL283C-1	INTERGENIC	Telomere+*	0.996150696	0.269388641		YPL283C		YRF1-7		TRUE	TRUE	TRUE		16	6970	7933	TRUE			"near identity to other subtelomerically-encoded protein, including Ygr296p"	
TEL15R-2	INTERGENIC	Telomere+*	0.993233207	0.875441729						TRUE	TRUE	TRUE		15	1084603	1085920	TRUE				
TEL9L	INTERGENIC	Telomere+*	0.994212114	0.658630425						TRUE	TRUE	TRUE		9	80	482	TRUE				
YAL068C	ORF	Telomere+*	0.974037674	0.252033048	YAL068C						TRUE			1	2169	1807	TRUE		YAL068C -- Member of seripauperin (PAU) family		
YAL069W	ORF	Telomere+*	0.998940246	0.81623995	YAL069W					TRUE	TRUE	TRUE		1	335	649	TRUE		YAL069W -- unknown functionlikely not a real ORF		
YAR073W	ORF	Telomere+*	0.98894207	0.674993942	YAR073W	YAR075W				TRUE	TRUE			1	227728	228939	TRUE		"YAR073W -- strong similarity to inosine-5'-monophosphate dehydrogenase, frameshifted from YAR075W, possible pseudogene"	"strong similarity to inosine-5'-monophosphate dehydrogenase, frameshifted from YAR073W, possible pseudogene"	
YAR075W	ORF	Telomere+*	0.989107113	0.450485391	YAR075W					TRUE	TRUE	TRUE		1	228830	229303	TRUE		"YAR075W -- strong similarity to inosine-5'-monophosphate dehydrogenase, frameshifted from YAR073W, possible pseudogene"		
YBL108W	ORF	Telomere+*	0.981900082	0.937839415	YBL108W	YBL107W-A				TRUE	TRUE	TRUE		2	8177	8482	TRUE		YBL108W -- unknown function		
YBL109W	ORF	Telomere+*	0.999429363	0.967769564	YBL109W	YBL111C	YBL108W			TRUE	TRUE	TRUE		2	5790	6125	TRUE		YBL109W -- unknown function		unknown function
YCL075W	ORF	Telomere+*	0.996781647	0.892070251		YCL074W				TRUE	TRUE	TRUE		3	2118	2558	TRUE				
YCL076W	ORF	Telomere+*	0.998844694	0.919940947	YCL076W	YBR302C	YCL075W	COS2		TRUE	TRUE	TRUE		3	1537	2127	TRUE		YCL076W -- unknown function	Member of the COS family of subtelomerically-encoded proteins	
YCLWOMEGA1	LTR	Telomere+*	0.995904996	0.555051611		YCL076W				TRUE	TRUE	TRUE		3	1172	1422	TRUE			unknown	
YDR542W	ORF	Telomere+*	0.98852946	0.747212234	YDR542W	YDR541C				TRUE	TRUE			4	1523290	1523652	TRUE		YDR542W -- Member of seripauperin (PAU) family	weak similarity to dihydroflavonol-4-reductases	
YDR543C	ORF	Telomere+*	0.999546631	0.939846795	YDR543C					TRUE	TRUE	TRUE		4	1524974	1524675	TRUE		YDR543C -- similarity to other subtelomerically-encoded proteins		
YDR544C	ORF	Telomere+*	0.999510382	0.982916772	YDR544C	YDR543C	YDR545W		YRF1-1	TRUE		TRUE		4	1525564	1525136	TRUE		YDR544C -- unknown function	similarity to other subtelomerically-encoded proteins	"near identity to the family of subtelomerically-encoded proteins including Yil177p, Yhl049p, and Yjl225p"
YEL074W	ORF	Telomere+*	0.986630798	0.414221832	YEL074W	YEL075C				TRUE	TRUE			5	6126	6464	TRUE		YEL074W -- unknown function	"similarity to other subtelomerically-encoded proteins including Yhl049p, Yil177p, and Yjl225p"	
YER189W	ORF	Telomere+*	0.981902666	0.927775894	YER189W	YER190W		YRF1-2		TRUE	TRUE			5	571151	571519	TRUE		"YER189W -- similarity to subtelomerically-encoded proteins including Yil177p, Yhl049p, and Yjl225p"	similarity to other subtelomerically-encoded proteins including Yil177p	
YFL063W	ORF	Telomere+*	0.999009738	0.667617887	YFL063W	YFL064C	YFL062W		COS4	TRUE	TRUE	TRUE		6	5066	5521	TRUE		YFL063W -- similarity to Gin11p and Ykl225p	"similarity to other subtelomerically-encoded proteins including Yhl049p, Yil177p, Yjl225p, Yer189p, Yel075p, and Yer190p"	Member of COS family of subtelomerically-encoded proteins
YHR216W	ORF	Telomere+*	0.991995379	0.911639753	YHR216W					TRUE	TRUE	TRUE		8	554391	555962	TRUE		YHR216W -- Inosine-5'-monophosphate dehydrogenaseconverts inosine 5'-phosphate and NAD(+) to xanthosine 5'-phosphate and NADH		
YHR217C	ORF	Telomere+*	0.99867965	0.889292823	YHR217C	YHR218W				TRUE	TRUE	TRUE		8	557037	556576	TRUE		YHR217C -- unknown function	"near identity to subtelomerically-encoded proteins including Yhr219p and Yfl065p, possible pseudogene"	
YIL175W	ORF	Telomere+*	0.98234032	0.883872572		YIL176C	YIL174W			TRUE	TRUE			9	9183	9500	TRUE			similarity to members of the PAU1 family	"similarity to Yir040p, member of Ybl108p/Ycr103p/Ykl223p family"
YJL223C	ORF	Telomere+*	0.980027717	0.80785914	PAU1	YJL225C	YJL222W			TRUE	TRUE			10	9138	8776	TRUE		PAU1 -- Member of seripauperin (PAU) family (PAU1 and YIL176C code for identical proteins)	"near identity to other subtelomerically-encoded proteins including Yil177p, Yhr219p, and Yhl079p"	"similarity to Pep1p, Vth1p, Ycr099p, Ycr100p, and Ycr101pcontains PEST sequences in the C-terminal regions as does Pep1p"
YJR162C	ORF	Telomere+*	0.999092259	0.756446422	YJR162C	YJR161C	YKL225W	COS5		TRUE	TRUE	TRUE		10	744950	744600	TRUE		YJR162C -- similarity to subtelomerically-encoded proteins including Gin11p and Ykl225p	Member of the COS family of subtelomerically-encoded proteins	unknown function
YKL225W	ORF	Telomere+*	0.996396396	0.545476913	YKL225W					TRUE	TRUE	TRUE		11	452	799	TRUE		YKL225W -- unknown function		
YKR105C	ORF	Telomere+*	0.994388513	0.727618366	YKR105C	YKR106W				TRUE	TRUE			11	660096	658348	TRUE		YKR105C -- Member of multidrug-resistance 14-spanner family of major facilitator superfamily (MFS-MDR)	Member of the yeast-specific putative multidrug-resistance family of the major facilitator superfamily (MFS)	
YKR106W	ORF	Telomere+*	0.989684766	0.371524645	YKR106W	YKR105C				TRUE	TRUE			11	661074	662921	TRUE		YKR106W -- Member of yeast-specific putative multidrug-resistance family of major facilitator superfamily (MFS)	Member of the multidrug-resistance 14-spanner family of the major facilitator superfamily (MFS-MDR)	
YLL065W	ORF	Telomere+*	0.999504869	0.856361572	GIN11	YLL066C				TRUE	TRUE	TRUE		12	11726	12076	TRUE		"GIN11 -- similarity to other subtelomerically-encoded proteins including Yjr162p, Ykl225p, and Yfl063p"	"near identity to other subtelomerically-encoded proteins including Yhl050p, Yil177p, and Yhr219p"	
YLR461W	ORF	Telomere+*	0.972772479	0.492080342	PAU4	YLR460C	YLR462W			TRUE	TRUE			12	1062914	1063276	TRUE		PAU4 -- Member of seripauperin (PAU) family	strong similarity to Ycr102p	unknown function
YMR326C	ORF	Telomere+*	0.997215397	0.577467284	YMR326C					TRUE	TRUE	TRUE		13	923801	923493	TRUE		YMR326C -- similarity to members of PAU1 family		
YNL338W	ORF	Telomere+*	0.983128583	0.085899245	YNL338W	YNL339C	YNL337W	YRF1-6		TRUE	TRUE	TRUE		14	6561	6719	TRUE		YNL338W -- unknown function	near identity to other subtelomerically-encoded proteins	unknown function
YNR077C	ORF	Telomere+*	0.99777191	0.471740393	YNR077C						TRUE	TRUE		14	783536	783282	TRUE		YNR077C -- unknown function