Chromosome sizes

Calculation of novel band sizes from PFG in Figure 1.

Figure 2 datafiles

Each file includes filtered log(base2)ratios of evolved strain (labeled red unless otherwise noted) to ancestor strain (green unless otherwise noted) for two experiments, the average of those two experiments, a running average over nine genes, conversion to a copy number, and separation into "high" and "low" categories, colored red and green, respectively, in Figure 2 of the paper. CP1ABaCGH.xls also contains the values used as cutoffs to separate the data into "high" and "low." I've also included the raw, unprocessed data files for each experiment. The raw data files are named with the Experiment ID from the Stanford Microarray Database, in which the data are deposited.

Figure 4 datafiles

Each file contains the log(base2)ratio of DNA eluted from the excised PFGE band from the evolved strain to DNA eluted from a CP1AB plug containing whole genome DNA and a running average of these data over three genes. For each comparison, there are files with the filtered data, the division into enriched and unenriched for the relevant chromosomes, and the raw data.

Spore array CGH

These files have the array CGH data for the E1 and E4 spores (red) vs the ancestor strain (green). These are raw data files. The names reflect the Experiment ID number in SMD.