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Download
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Hierarchical Clustering
The clustered data format (CDT) files of the raw data (before SVD), used for
figure 2 (after SVD), and obtained after bias removal with ANOVA can be downloaded here. Genes listed in Webtable 5 are included in these files. You
can view these files with the PC program
TreeView (written by Mike Eisen).
- Raw data (before SVD): CDT|
GTR|
ATR
(get all three files; 2328KB, 338KB, 2KB)
- Figure 2 (after SVD): CDT|
GTR|
ATR
(get all three files; 2118KB, 251KB, 2KB)
- After bias removal with ANOVA: CDT|
GTR|
ATR
(get all three files; 2087KB, 267KB, 2KB)
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SVD
The complete eigengene text files used to compile Webtables 2A-C and 4
can be downloaded here.
- Eigengene A (synovial sarcoma & GIST vs the other tumors)
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Eigengene B (synovial sarcoma (positive value) vs GIST (negative value))
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Eigengene C (calponin-positive leiomyosarcomas vs the other tumors)
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SAM
The complete SAM excel files used to compile Webtable 3 can be downloaded here. (Warning; these are large files (10.5MB)).
You can download the software tools for performing Significance Analysis of Microarrays at the SAM Supervised learning software page.
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