Home 
Molecular Portraits of Soft Tissue Tumors  
Explore 
GenExplore the total dataset of 46 arrays x 5520 genes  
Materials and Methods 
Description of Materials and Methods  
Figures and Tables  
Figures, Supplemental Web Figures, and Tables  
Supplemental Information 
Supplemental information on data analysis  
Download 
Download complete dataset  
Histology 
H&E sections from the tumors  
Authors 
 

Download 

 

Hierarchical Clustering

The clustered data format (CDT) files of the raw data (before SVD), used for figure 2 (after SVD), and obtained after bias removal with ANOVA can be downloaded here. Genes listed in Webtable 5 are included in these files. You can view these files with the PC program TreeView (written by Mike Eisen).
  • Raw data (before SVD): CDT| GTR| ATR (get all three files; 2328KB, 338KB, 2KB)

  • Figure 2 (after SVD): CDT| GTR| ATR (get all three files; 2118KB, 251KB, 2KB)

  • After bias removal with ANOVA: CDT| GTR| ATR (get all three files; 2087KB, 267KB, 2KB)

SVD

The complete eigengene text files used to compile Webtables 2A-C and 4 can be downloaded here.


  • Eigengene A (synovial sarcoma & GIST vs the other tumors)


  • Eigengene B (synovial sarcoma (positive value) vs GIST (negative value))


  • Eigengene C (calponin-positive leiomyosarcomas vs the other tumors)


SAM

The complete SAM excel files used to compile Webtable 3 can be downloaded here. (Warning; these are large files (10.5MB)).

You can download the software tools for performing Significance Analysis of Microarrays at the SAM Supervised learning software page.

[ Home | Explore | Materials and Methods | Figures | Supplemental data | Download | Authors ]
Web site last modified on March 12th, 2002