Gene Expression Patterns in Scleroderma

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Gene expression in scleroderma home

Figures

Figures from the paper

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GeneXplore the gene expression patterns of scleroderma

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Supplemental information

Data

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Methods

Protocols and descriptions of materials and methods

Authors

People involved in the scleroderma profiling project

Data

If you prefer to download the data to your PC without displaying it in the browser directly, it is possible to get them from our web site using HTTP in an equivalent manner to FTP. In order to download the figures, do the following: If using a PC, right click on each PDF file using your mouse and then choose Save Target As. If using MacOS, option-clicking is the equivalent command.

Data from the full analysis, as visualized in the figures, is in the following files. All files are tab-delimited text files unless noted otherwise

Complete Affymetrix data for all genes across all arrays.
ProcessedData_Scleroderma.pcl - the pre-clustered, filtered data
U95A_key.txt This file translates the Affymetrix feature identifiers to GenBank accession numbers.
SampleKey.txt This file translates the Affymetrix array identifiers to the sample identifiers used in the publication.
Data from Figure 1
Figure1_Affydata.cdt - the complete data table matrix
Figure1_Affydata.gtr - the gene tree correlations
Figure1_Affydata.atr - the array tree correlations
Data from Figure 2
Figure2.pcl - the pre-clustered, filtered and merged cell line and Affymetrix data
Figure2.cdt - the complete data table matrix Figure2.gtr - the gene tree correlations
Data from Figure 4
Figure4.pcl - the pre-clustered data file
Figure4.cdt - the complete data table matrix Figure4.atr - the array tree correlations

Download the Scleroderma Affymetrix raw data files (unfiltered)

Browse, analyze, or download the data from within the Stanford Microarray Database

Raw Affymetrix data, including all primary data files are available from ArrayExpress at the EBI (Accession# E-MEXP-32).