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ID SV40 standard; circular DNA; VRL; 5243 BP.
XX
AC V01380;
XX
DT 01-JUL-1995 (Rel. 01, Created)
DT 01-JUL-1995 (Rel. 12, Last updated, Version 1)
XX
DE Monkey virus SV40 - complete.
XX
KW cloning vector.
XX
OS Rhesus macaque polyomavirus
OC Viridae; ds-DNA nonenveloped viruses; Papovaviridae;
OC Polyomaviruses.
XX
RN [1]
RP 1-5243
RC SV40 from monkey
RA Fiers W., Contreras R.R., Haegeman G., Rogiers R., De Voorde A.,
RA van Heuverswyn H., Van Herreweghe J., Volckaert G., Ysebaert M.;
RT "Complete nucleotide sequence of SV40 DNA";
RL Nature 273:113-120(1978).
XX
RN [2]
RP 1-5243
RC SV40 from monkey
RA Buchman A.R., Burnett L., Berg P.;
RT "The SV40 nucleotide sequence";
RL DNA Tumor Viruses [2nd edition] 0:799-823(1980).
RL Tooze J., ed., Cold Spring Harbor Laboratory.
XX
RN [3]
RC SV40 from monkey
RA Everett R.D., Baty D., Chambon P.;
RT "The repeated GC-rich motifs upstream from the TATA box are
RT important elements of the SV40 early promoter";
RL Nucleic Acids Res. 11:2447-2464(1983).
XX
RN [4]
RC SV40 from monkey
RA Noble J.C., Prives C., Manley J.L.;
RT "In vitro splicing of simian virus 40 early pre mRNA";
RL Nucleic Acids Res. 14:1219-1235(1986).
XX
RN [5]
RP 5165-5243
RC SV40 from monkey
RA Tenen D.G., Taylor T.S., Haines L.L., Bradley M.K., Martin R.G.,
RA Livingston D.M.;
RT "Binding of simian virus 40 large T antigen from virus-infected
RT monkey cells to wild-type and mutant viral replication origins";
RL J. Mol. Biol. 168:791-808(1983).
XX
RN [6]
RC SV40 from monkey
RA Barrera-Saldana H., Takahashi K., Vigneron M., Wildeman A.,
RA Davidson I., Chambon P.;
RT "All six GC-motifs of the SV40 early upstream element contribute
RT to promoter activity in vivo and in vitro";
RL EMBO J. 4:3839-3849(1985).
XX
CC Sequence was taken from reference [2].
CC NM (SV40)
CC CM (yes)
CC NA (ds-DNA)
CC TP (circular)
CC ST ()
CC TY (virus)
CC SP ()
CC HO (monkey)
CC CP ()
CC FN (cloning)
CC SE ()
CC PA (monkey)
CC BR ()
CC OF ()
CC OR ()
XX
FH Key Location/Qualifiers
FH
FT misc_feature 0..0
FT /note="1. monkey
FT -> SV40 5243bp"
FT promoter complement(15..21)
FT /note="TATA-box [3]"
FT repeat_region 40..61
FT /note="imperfect 32 bp repeat (early promoter)"
FT repeat_region 62..82
FT /note="21 bp repeat (early promoter)"
FT repeat_region 83..103
FT /note="21 bp repeat (early promoter)"
FT repeat_region 107..178
FT /note="72 bp repeat (early promoter)"
FT mRNA 120..2674
FT /note="major 16S RNA"
FT repeat_region 179..250
FT /note="72 bp repeat (early promoter)"
FT CDS 562..1620
FT /product="VP2"
FT CDS 916..1620
FT /product="VP3"
FT CDS 1499..2593
FT /product="VP1"
FT CDS join(complement(4918..5163),complement(2691..4571))
FT /product="large T"
FT mRNA complement(2587..4571)
FT /note="mRNA of small t (part 2)"
FT mRNA complement(2587..4571)
FT /note="mRNA of large T (part 2)"
FT CDS complement(4639..5163)
FT /product="small t"
FT mRNA complement(4918..5235)
FT /note="mRNA of large T (part 1)"
FT mRNA complement(4638..5235)
FT /note="mRNA of small t (part 1)"
XX
SQ Sequence 5243 BP; 1518 A; 1100 C; 1039 G; 1586 T; 0 other;
gcctcggcct ctgcataaat aaaaaaaatt agtcagccat ggggcggaga atgggcggaa
ctgggcggag ttaggggcgg gatgggcgga gttaggggcg ggactatggt tgctgactaa
ttgagatgca tgctttgcat acttctgcct gctggggagc ctggggactt tccacacctg
gttgctgact aattgagatg catgctttgc atacttctgc ctgctgggga gcctggggac
tttccacacc ctaactgaca cacattccac agctggttct ttccgcctca gaaggtacct
aaccaagttc ctctttcaga ggttatttca ggccatggtg ctgcgccggc tgtcacgcca
ggcctccgtt aaggttcgta ggtcatggac tgaaagtaaa aaaacagctc aacgcctttt
tgtgtttgtt ttagagcttt tgctgcaatt ttgtgaaggg gaagatactg ttgacgggaa
acgcaaaaaa ccagaaaggt taactgaaaa accagaaagt taactggtaa gtttagtctt
tttgtctttt atttcaggtc catgggtgct gctttaacac tgttggggga cctaattgct
actgtgtctg aagctgctgc tgctactgga ttttcagtag ctgaaattgc tgctggagag
gccgctgctg caattgaagt gcaacttgca tctgttgcta ctgttgaagg cctaacaacc
tctgaggcaa ttgctgctat aggcctcact ccacaggcct atgctgtgat atctggggct
cctgctgcta tagctggatt tgcagcttta ctgcaaactg tgactggtgt gagcgctgtt
gctcaagtgg ggtatagatt ttttagtgac tgggatcaca aagtttctac tgttggttta
tatcaacaac caggaatggc tgtagatttg tataggccag atgattacta tgatatttta
tttcctggag tacaaacctt tgttcacagt gttcagtatc ttgaccccag acattggggt
ccaacacttt ttaatgccat ttctcaagct ttttggcgtg taatacaaaa tgacattcct
aggctcacct cacaggagct tgaaagaaga acccaaagat atttaaggga cagtttggca
aggtttttag aggaaactac ttggacagta attaatgctc ctgttaattg gtataactct
ttacaagatt actactctac tttgtctccc attaggccta caatggtgag acaagtagcc
aacagggaag ggttgcaaat atcatttggg cacacctatg ataatattga tgaagcagac
agtattcagc aagtaactga gaggtgggaa gctcaaagcc aaagtcctaa tgtgcagtca
ggtgaattta ttgaaaaatt tgaggctcct ggtggtgcaa atcaaagaac tgctcctcag
tggatgttgc ctttacttct aggcctgtac ggaagtgtta cttctgctct aaaagcttat
gaagatggcc ccaacaaaaa gaaaaggaag ttgtccaggg gcagctccca aaaaaccaaa
ggaaccagtg caagtgccaa agctcgtcat aaaaggagga atagaagttc taggagttaa
aactggagta gacagcttca ctgaggtgga gtgcttttta aatcctcaaa tgggcaatcc
tgatgaacat caaaaaggct taagtaaaag cttagcagct gaaaaacagt ttacagatga
ctctccagac aaagaacaac tgccttgcta cagtgtggct agaattcctt tgcctaattt
aaatgaggac ttaacctgtg gaaatatttt gatgtgggaa gctgttactg ttaaaactga
ggttattggg gtaactgcta tgttaaactt gcattcaggg acacaaaaaa ctcatgaaaa
tggtgctgga aaacccattc aagggtcaaa ttttcatttt tttgctgttg gtggggaacc
tttggagctg cagggtgtgt tagcaaacta caggaccaaa tatcctgctc aaactgtaac
cccaaaaaat gctacagttg acagtcagca gatgaacact gaccacaagg ctgttttgga
taaggataat gcttatccag tggagtgctg ggttcctgat ccaagtaaaa atgaaaacac
tagatatttt ggaacctaca caggtgggga aaatgtgcct cctgttttgc acattactaa
cacagcaacc acagtgcttc ttgatgagca gggtgttggg cccttgtgca aagctgacag
cttgtatgtt tctgctgttg acatttgtgg gctgtttacc aacacttctg gaacacagca
gtggaaggga cttcccagat attttaaaat tacccttaga aagcggtctg tgaaaaaccc
ctacccaatt tcctttttgt taagtgacct aattaacagg aggacacaga gggtggatgg
gcagcctatg attggaatgt cctctcaagt agaggaggtt agggtttatg aggacacaga
ggagcttcct ggggatccag acatgataag atacattgat gagtttggac aaaccacaac
tagaatgcag tgaaaaaaat gctttatttg tgaaatttgt gatgctattg ctttatttgt
aaccattata agctgcaata aacaagttaa caacaacaat tgcattcatt ttatgtttca
ggttcagggg gaggtgtggg aggtttttta aagcaagtaa aacctctaca aatgtggtat
ggctgattat gatcatgaac agactgtgag gactgagggg cctgaaatga gccttgggac
tgtgaatcaa tgcctgtttc atgccctgag tcttccatgt tcttctcccc accatcttca
tttttatcag cattttcctg gctgtcttca tcatcatcat cactgtttct tagccaatct
aaaactccaa ttcccatagc cacattaaac ttcatttttt gatacactga caaactaaac
tctttgtcca atctctcttt ccactccaca attctgctct gaatactttg agcaaactca
gccacaggtc tgtaccaaat taacataaga agcaaagcaa tgccactttg aattattctc
ttttctaaca aaaactcact gcgttccagg caatgcttta aataatcttt gggcctaaaa
tctatttgtt ttacaaatct ggcctgcagt gttttaggca cactgtactc attcatggtg
actattccag ggggaaatat ttgagttctt ttatttaggt gtttcttttc taagtttacc
ttaacactgc catccaaata atcccttaaa ttgtccaggt tattaattcc ctgacctgaa
ggcaaatctc tggactcccc tccagtgccc tttacatcct caaaaactac taaaaactgg
tcaatagcta ctcctagctc aaagttcagc ctgtccaagg gcaaattaac atttaaagct
ttccccccac ataattcaag caaagcagct gctaatgtag ttttaccact atcaattggt
cctttaaaca gccagtatct ttttttagga atgttgtaca ccatgcattt taaaaagtca
tacaccactg aatccatttt gggcaacaaa cagtgtagcc aagcaactcc agccatccat
tcttctatgt cagcagagcc tgtagaacca aacattatat ccatcctatc caaaagatca
ttaaatctgt ttgttaacat ttgttctcta gttaattgta ggctatcaac ccgcttttta
gctaaaacag tatcaacagc ctgttggcat atggtttttt ggtttttgct gtcagcaaat
atagcagcat ttgcataatg cttttcatgg tacttatagt ggctgggctg ttctttttta
atacatttta aacacatttc aaaactgtac tgaaattcca agtacatccc aagcaataac
aacacatcat cacattttgt ttccattgca tactctgtta caagcttcca ggacacttgt
ttagtttcct ctgcttcttc tggattaaaa tcatgctcct ttaacccacc tggcaaactt
tcctcaataa cagaaaatgg atctctagtc aaggcactat acatcaaata ttccttatta
acccctttac aaattaaaaa gctaaaggta cacaattttt gagcatagtt attaatagca
gacactctat gcctgtgtgg agtaagaaaa aacagtatgt tatgattata actgttatgc
ctacttataa aggttacaga atatttttcc ataattttct tgtatagcag tgcagctttt
tcctttgtgg tgtaaatagc aaagcaagca agagttctat tactaaacac agcatgactc
aaaaaactta gcaattctga aggaaagtcc ttggggtctt ctacctttct cttctttttt
ggaggagtag aatgttgaga gtcagcagta gcctcatcat cactagatgg catttcttct
gagcaaaaca ggttttcctc attaaaggca ttccaccact gctcccattc atcagttcca
taggttggaa tctaaaatac acaaacaatt agaatcagta gtttaacaca ttatacactt
aaaaatttta tatttacctt agagctttaa atctctgtag gtagtttgtc caattatgtc
acaccacaga agtaaggttc cttcacaaag atcaagtcca aaccacattc taaagcaatc
gaagcagtag caatcaaccc acacaagtgg atctttcctg tataattttc tattttcatg
cttcatcctc agtaagcaca gcaagcatat gcagttagca gacattttct ttgcacactc
aggccattgt ttgcagtaca ttgcatcaac accaggattt aaggaagaag caaatacctc
agttgcatcc cagaagcctc caaagtcagg ttgatgagca tattttactc catcttccat
tttcttgtac agagtattca ttttcttcat tttttcttca tctcctcctt tatcaggatg
aaactccttg cattttttta aatatgcctt tctcatcaga ggaatattcc cccaggcact
cctttcaaga cctagaaggt ccattagctg caaagattcc tctctgttta aaactttatc
catctttgca aagctttttg caaaagccta ggcctccaaa aaagcctcct cactacttct
ggaatagctc agaggccgag gcg
//