Yeast-Worm Index Help


Yeast vs Worm Blast Summaries

Worm-Yeast Home | Shared & Unshared Similarity Group Summaries | Download Datasets
Extended Table 2 | Worm-Yeast BLAST Summaries | Description of Methods | Sanger Centre | SGD Home


Summary of C. elegans Homologs Based on P-Value

P-Value Yeast ORFs at P-value or Lower Worm Homologs
Na Percentb Descrc Nd Percente Descrf
1 X 10-10 2383 38.3% 86% 1730 9.1% 64%
1 X 10-20 1766 28.4% 89% 1301 6.8% 69%
1 X 10-40 1077 17.3% 93% 818 4.3% 71%
1 X 10-60 667 10.7% 96% 523 2,7% 74%
1 X 10-80 447 7.2% 96% 349 1.8% 74%
1 X 10-100 313 5.0% 98% 249 1.3% 77%
1 X 10-200 59 0.9% 98% 47 0.2% 88%
For this analysis, each yeast ORF protein sequence was analyzed using BLASTP against a database containing all worm ORF protein sequences.
a The number of yeast ORFs producing a hit to at least one worm protein at the indicated WashU-BLAST2 expectation value. Click on the the number to get a table containing a list of each hit and additional links to database entries and BLAST reports.
b Percent of total yeast ORFs (n = 6,217).
c Percent of yeast ORFs within this set having a functional description.
d The number of different worm ORFs within the given set of yeast-vs-worm hits.
e Percent of total worm ORFs (n = 19,099).
f Percent of worm ORFs within this set having a functional description as of 28 October 1998.

Summary of C. elegans Homologs Based on Percent Identity *


Percent Identity Yeast ORFs at Percent Identity or Higher Worm Homologs Percent of Total Yeast ORFs (n=6,217)
30% 1759 1531 28.3%
40% 800 669 12.9%
50% 383 308 6.2%
60% 163 122 2.6%
70% 47 35 0.8%
80% 15 14 0.2%
90% 1 1 0.01%
* The second column lists the number of yeast ORFs with at least the indicated percent of amino acid identity over 50% or more of the yeast sequence for a given comparison.

http://genome-www.stanford.edu/yeast-worm/
The SGD team
Last Modified: 1998-12-07 KD		 Send a Message to the SGD Curators